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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-121165264-TC-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=121165264&ref=TC&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 121165264,
"ref": "TC",
"alt": "T",
"effect": "splice_region_variant,intron_variant",
"transcript": "ENST00000392793.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "c.5273-8delC",
"hgvs_p": null,
"transcript": "NM_005422.4",
"protein_id": "NP_005413.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2155,
"cds_start": -4,
"cds_end": null,
"cds_length": 6468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7353,
"mane_select": "ENST00000392793.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "c.5273-8delC",
"hgvs_p": null,
"transcript": "ENST00000392793.6",
"protein_id": "ENSP00000376543.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2155,
"cds_start": -4,
"cds_end": null,
"cds_length": 6468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7353,
"mane_select": "NM_005422.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "c.5273-8delC",
"hgvs_p": null,
"transcript": "ENST00000264037.2",
"protein_id": "ENSP00000264037.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2155,
"cds_start": -4,
"cds_end": null,
"cds_length": 6468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6468,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 22,
"intron_rank_end": null,
"gene_symbol": "TBCEL-TECTA",
"gene_hgnc_id": 54857,
"hgvs_c": "c.6215-8delC",
"hgvs_p": null,
"transcript": "NM_001378761.1",
"protein_id": "NP_001365690.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2469,
"cds_start": -4,
"cds_end": null,
"cds_length": 7410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8301,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "c.5258-8delC",
"hgvs_p": null,
"transcript": "ENST00000642222.1",
"protein_id": "ENSP00000493855.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2150,
"cds_start": -4,
"cds_end": null,
"cds_length": 6453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7162,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "c.2564-8delC",
"hgvs_p": null,
"transcript": "ENST00000645008.1",
"protein_id": "ENSP00000496274.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1328,
"cds_start": -4,
"cds_end": null,
"cds_length": 3987,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"hgvs_c": "n.1194-8delC",
"hgvs_p": null,
"transcript": "ENST00000646278.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3381,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "TECTA",
"gene_hgnc_id": 11720,
"dbsnp": "rs727504781",
"frequency_reference_population": 0.000056562792,
"hom_count_reference_population": 0,
"allele_count_reference_population": 90,
"gnomad_exomes_af": 0.0000291907,
"gnomad_genomes_af": 0.000315085,
"gnomad_exomes_ac": 42,
"gnomad_genomes_ac": 48,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": 0.05000000074505806,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 2.074,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.05,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP6_Very_Strong,BS1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP6_Very_Strong",
"BS1"
],
"verdict": "Benign",
"transcript": "ENST00000392793.6",
"gene_symbol": "TECTA",
"hgnc_id": 11720,
"effects": [
"splice_region_variant",
"intron_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.5273-8delC",
"hgvs_p": null
},
{
"score": -8,
"benign_score": 8,
"pathogenic_score": 0,
"criteria": [
"BP6_Very_Strong"
],
"verdict": "Benign",
"transcript": "NM_001378761.1",
"gene_symbol": "TBCEL-TECTA",
"hgnc_id": 54857,
"effects": [
"splice_region_variant",
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.6215-8delC",
"hgvs_p": null
}
],
"clinvar_disease": "not provided,not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2",
"phenotype_combined": "not specified|not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}