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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-121610698-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=121610698&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 121610698,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "NM_003105.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.5240-378C>T",
"hgvs_p": null,
"transcript": "NM_003105.6",
"protein_id": "NP_003096.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2214,
"cds_start": -4,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10863,
"mane_select": "ENST00000260197.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.5240-378C>T",
"hgvs_p": null,
"transcript": "ENST00000260197.12",
"protein_id": "ENSP00000260197.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2214,
"cds_start": -4,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10863,
"mane_select": "NM_003105.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "n.2499C>T",
"hgvs_p": null,
"transcript": "ENST00000528339.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3703,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.2072-378C>T",
"hgvs_p": null,
"transcript": "ENST00000525532.5",
"protein_id": "ENSP00000434634.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1158,
"cds_start": -4,
"cds_end": null,
"cds_length": 3477,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3836,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.1970-378C>T",
"hgvs_p": null,
"transcript": "ENST00000534286.5",
"protein_id": "ENSP00000436447.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3501,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.1778-378C>T",
"hgvs_p": null,
"transcript": "ENST00000532694.5",
"protein_id": "ENSP00000432131.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1060,
"cds_start": -4,
"cds_end": null,
"cds_length": 3183,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3692,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"hgvs_c": "c.1085-378C>T",
"hgvs_p": null,
"transcript": "ENST00000527934.1",
"protein_id": "ENSP00000435405.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 829,
"cds_start": -4,
"cds_end": null,
"cds_length": 2490,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3032,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "SORL1",
"gene_hgnc_id": 11185,
"dbsnp": "rs726601",
"frequency_reference_population": 0.30139548,
"hom_count_reference_population": 8746,
"allele_count_reference_population": 50107,
"gnomad_exomes_af": 0.334805,
"gnomad_genomes_af": 0.298259,
"gnomad_exomes_ac": 4777,
"gnomad_genomes_ac": 45330,
"gnomad_exomes_homalt": 852,
"gnomad_genomes_homalt": 7894,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -1.0299999713897705,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -1.03,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -3.302,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "NM_003105.6",
"gene_symbol": "SORL1",
"hgnc_id": 11185,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.5240-378C>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}