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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-12231877-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=12231877&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 12231877,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000683283.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "NM_001282663.2",
"protein_id": "NP_001269592.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3903,
"mane_select": "ENST00000683283.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "ENST00000683283.1",
"protein_id": "ENSP00000507067.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3903,
"mane_select": "NM_001282663.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "ENST00000256194.8",
"protein_id": "ENSP00000256194.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3906,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "ENST00000528931.5",
"protein_id": "ENSP00000499778.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 955,
"cds_start": -4,
"cds_end": null,
"cds_length": 2868,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2868,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "n.1822-4300C>T",
"hgvs_p": null,
"transcript": "ENST00000530691.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6307,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "NM_001393937.1",
"protein_id": "NP_001380866.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1957,
"cds_start": -4,
"cds_end": null,
"cds_length": 5874,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9824,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "ENST00000646065.2",
"protein_id": "ENSP00000494982.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1957,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 9535,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "NM_001346292.2",
"protein_id": "NP_001333221.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3832,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "NM_014632.4",
"protein_id": "NP_055447.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1124,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 3907,
"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
"hgvs_p": null,
"transcript": "NM_001282664.1",
"protein_id": "NP_001269593.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 15,
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"gene_symbol": "MICAL2",
"gene_hgnc_id": 24693,
"hgvs_c": "c.1996-4300C>T",
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"transcript": "NM_001346293.2",
"protein_id": "NP_001333222.1",
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{
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],
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],
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"gene_symbol": "MICAL2",
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],
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},
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],
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},
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],
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},
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],
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"gene_symbol": "MICAL2",
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],
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],
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"gene_symbol": "MICAL2",
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"hgvs_c": "c.1996-4300C>T",
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"transcript": "NM_001282665.1",
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},
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],
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"gene_symbol": "MICAL2",
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}