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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-14519042-CTAAAAG-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=14519042&ref=CTAAAAG&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 14519042,
      "ref": "CTAAAAG",
      "alt": "C",
      "effect": "splice_acceptor_variant,splice_region_variant,intron_variant",
      "transcript": "NM_148976.3",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "NM_002786.4",
          "protein_id": "NP_002777.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 263,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 792,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000396394.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002786.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000396394.7",
          "protein_id": "ENSP00000379676.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 263,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 792,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_002786.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396394.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.22-7_22-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000418988.2",
          "protein_id": "ENSP00000414359.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 269,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 810,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000418988.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000256206",
          "gene_hgnc_id": null,
          "hgvs_c": "n.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000555531.1",
          "protein_id": "ENSP00000457299.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000555531.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000873423.1",
          "protein_id": "ENSP00000543482.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 303,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 912,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000873423.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000965885.1",
          "protein_id": "ENSP00000635944.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 282,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 849,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965885.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000873425.1",
          "protein_id": "ENSP00000543484.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 275,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 828,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000873425.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.22-7_22-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "NM_148976.3",
          "protein_id": "NP_683877.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 269,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 810,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_148976.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000718310.1",
          "protein_id": "ENSP00000520747.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 263,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 792,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000718310.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.-72-7_-72-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000530457.5",
          "protein_id": "ENSP00000441166.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 238,
          "cds_start": null,
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          "cds_length": 717,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000530457.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000873420.1",
          "protein_id": "ENSP00000543480.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 226,
          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 9,
          "intron_rank": 1,
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          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000873422.1",
          "protein_id": "ENSP00000543481.1",
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          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
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          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000873424.1",
          "protein_id": "ENSP00000543483.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 220,
          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "feature": "ENST00000873424.1"
        },
        {
          "aa_ref": null,
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          ],
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          "intron_rank": 1,
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          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
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          "protein_id": "ENSP00000543485.1",
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          "cds_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000873426.1"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000965886.1",
          "protein_id": "ENSP00000635945.1",
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          "cds_start": null,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
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          "consequences": [
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            "splice_region_variant",
            "intron_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.4-7_4-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "NM_001143937.2",
          "protein_id": "NP_001137409.1",
          "transcript_support_level": null,
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        {
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          ],
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          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.3+1249_3+1254delCTTTTA",
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          "transcript": "ENST00000930532.1",
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        },
        {
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          "consequences": [
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            "splice_region_variant",
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          ],
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          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.-72-7_-72-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000533068.5",
          "protein_id": "ENSP00000439724.1",
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000533068.5"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "c.-72-7_-72-2delCTTTTA",
          "hgvs_p": null,
          "transcript": "ENST00000532256.1",
          "protein_id": "ENSP00000439080.1",
          "transcript_support_level": 2,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "transcript": "ENST00000526443.5",
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          "biotype": "retained_intron",
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        {
          "aa_ref": null,
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          "protein_coding": false,
          "strand": false,
          "consequences": [
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            "splice_region_variant",
            "intron_variant"
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          "exon_count": 7,
          "intron_rank": 1,
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          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "n.64-7_64-2delCTTTTA",
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          "transcript": "ENST00000528307.5",
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          "aa_start": null,
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          "biotype": "retained_intron",
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        },
        {
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          "protein_coding": false,
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          "consequences": [
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            "splice_region_variant",
            "intron_variant"
          ],
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          "exon_count": 5,
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          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "n.147-7_147-2delCTTTTA",
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          "transcript": "ENST00000531156.5",
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        {
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          "consequences": [
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            "splice_region_variant",
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          "exon_count": 5,
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          "gene_symbol": "PSMA1",
          "gene_hgnc_id": 9530,
          "hgvs_c": "n.85-7_85-2delCTTTTA",
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          "transcript": "ENST00000533331.5",
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          "cds_length": null,
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          "biotype": "retained_intron",
          "feature": "ENST00000533331.5"
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      ],
      "gene_symbol": "PSMA1",
      "gene_hgnc_id": 9530,
      "dbsnp": "rs552770453",
      "frequency_reference_population": 0.00055195735,
      "hom_count_reference_population": 5,
      "allele_count_reference_population": 873,
      "gnomad_exomes_af": 0.000336509,
      "gnomad_genomes_af": 0.00257454,
      "gnomad_exomes_ac": 481,
      "gnomad_genomes_ac": 392,
      "gnomad_exomes_homalt": 3,
      "gnomad_genomes_homalt": 2,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 7.248,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -4,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PVS1_Moderate,BP6_Moderate,BS2",
      "acmg_by_gene": [
        {
          "score": -4,
          "benign_score": 6,
          "pathogenic_score": 2,
          "criteria": [
            "PVS1_Moderate",
            "BP6_Moderate",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_148976.3",
          "gene_symbol": "PSMA1",
          "hgnc_id": 9530,
          "effects": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.22-7_22-2delCTTTTA",
          "hgvs_p": null
        },
        {
          "score": -6,
          "benign_score": 6,
          "pathogenic_score": 0,
          "criteria": [
            "BP6_Moderate",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000555531.1",
          "gene_symbol": "ENSG00000256206",
          "hgnc_id": null,
          "effects": [
            "splice_acceptor_variant",
            "splice_region_variant",
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.4-7_4-2delCTTTTA",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.