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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-22274589-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=22274589&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 22274589,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "ENST00000324559.9",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2256G>A",
          "hgvs_p": "p.Thr752Thr",
          "transcript": "NM_213599.3",
          "protein_id": "NP_998764.1",
          "transcript_support_level": null,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": 2256,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": 2664,
          "cdna_end": null,
          "cdna_length": 6742,
          "mane_select": "ENST00000324559.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2256G>A",
          "hgvs_p": "p.Thr752Thr",
          "transcript": "ENST00000324559.9",
          "protein_id": "ENSP00000315371.9",
          "transcript_support_level": 1,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": 2256,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": 2664,
          "cdna_end": null,
          "cdna_length": 6742,
          "mane_select": "NM_213599.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2253G>A",
          "hgvs_p": "p.Thr751Thr",
          "transcript": "NM_001142649.2",
          "protein_id": "NP_001136121.1",
          "transcript_support_level": null,
          "aa_start": 751,
          "aa_end": null,
          "aa_length": 912,
          "cds_start": 2253,
          "cds_end": null,
          "cds_length": 2739,
          "cdna_start": 2661,
          "cdna_end": null,
          "cdna_length": 6739,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2214G>A",
          "hgvs_p": "p.Thr738Thr",
          "transcript": "NM_001410963.1",
          "protein_id": "NP_001397892.1",
          "transcript_support_level": null,
          "aa_start": 738,
          "aa_end": null,
          "aa_length": 899,
          "cds_start": 2214,
          "cds_end": null,
          "cds_length": 2700,
          "cdna_start": 2622,
          "cdna_end": null,
          "cdna_length": 6700,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2214G>A",
          "hgvs_p": "p.Thr738Thr",
          "transcript": "ENST00000682341.1",
          "protein_id": "ENSP00000508251.1",
          "transcript_support_level": null,
          "aa_start": 738,
          "aa_end": null,
          "aa_length": 899,
          "cds_start": 2214,
          "cds_end": null,
          "cds_length": 2700,
          "cdna_start": 2674,
          "cdna_end": null,
          "cdna_length": 6739,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2211G>A",
          "hgvs_p": "p.Thr737Thr",
          "transcript": "NM_001410964.1",
          "protein_id": "NP_001397893.1",
          "transcript_support_level": null,
          "aa_start": 737,
          "aa_end": null,
          "aa_length": 898,
          "cds_start": 2211,
          "cds_end": null,
          "cds_length": 2697,
          "cdna_start": 2619,
          "cdna_end": null,
          "cdna_length": 6697,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2211G>A",
          "hgvs_p": "p.Thr737Thr",
          "transcript": "ENST00000684663.1",
          "protein_id": "ENSP00000508009.1",
          "transcript_support_level": null,
          "aa_start": 737,
          "aa_end": null,
          "aa_length": 898,
          "cds_start": 2211,
          "cds_end": null,
          "cds_length": 2697,
          "cdna_start": 2659,
          "cdna_end": null,
          "cdna_length": 6947,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2178G>A",
          "hgvs_p": "p.Thr726Thr",
          "transcript": "NM_001441294.1",
          "protein_id": "NP_001428223.1",
          "transcript_support_level": null,
          "aa_start": 726,
          "aa_end": null,
          "aa_length": 887,
          "cds_start": 2178,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": 2491,
          "cdna_end": null,
          "cdna_length": 6569,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2175G>A",
          "hgvs_p": "p.Thr725Thr",
          "transcript": "NM_001441295.1",
          "protein_id": "NP_001428224.1",
          "transcript_support_level": null,
          "aa_start": 725,
          "aa_end": null,
          "aa_length": 886,
          "cds_start": 2175,
          "cds_end": null,
          "cds_length": 2661,
          "cdna_start": 2488,
          "cdna_end": null,
          "cdna_length": 6566,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2163G>A",
          "hgvs_p": "p.Thr721Thr",
          "transcript": "NM_001441296.1",
          "protein_id": "NP_001428225.1",
          "transcript_support_level": null,
          "aa_start": 721,
          "aa_end": null,
          "aa_length": 882,
          "cds_start": 2163,
          "cds_end": null,
          "cds_length": 2649,
          "cdna_start": 2571,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
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          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2136G>A",
          "hgvs_p": "p.Thr712Thr",
          "transcript": "NM_001441297.1",
          "protein_id": "NP_001428226.1",
          "transcript_support_level": null,
          "aa_start": 712,
          "aa_end": null,
          "aa_length": 873,
          "cds_start": 2136,
          "cds_end": null,
          "cds_length": 2622,
          "cdna_start": 2449,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "ANO5",
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          "hgvs_c": "c.2100G>A",
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          "transcript": "NM_001441298.1",
          "protein_id": "NP_001428227.1",
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          "aa_length": 861,
          "cds_start": 2100,
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          "cdna_start": 2508,
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
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          "intron_rank": null,
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          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2097G>A",
          "hgvs_p": "p.Thr699Thr",
          "transcript": "NM_001441299.1",
          "protein_id": "NP_001428228.1",
          "transcript_support_level": null,
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          "cds_start": 2097,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.2214G>A",
          "hgvs_p": "p.Thr738Thr",
          "transcript": "ENST00000683197.1",
          "protein_id": "ENSP00000507641.1",
          "transcript_support_level": null,
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          "feature": null
        },
        {
          "aa_ref": "T",
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          "strand": true,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ANO5",
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          "hgvs_c": "c.1821G>A",
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.1818G>A",
          "hgvs_p": "p.Thr606Thr",
          "transcript": "NM_001441301.1",
          "protein_id": "NP_001428230.1",
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          "cds_start": 1818,
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.1806G>A",
          "hgvs_p": "p.Thr602Thr",
          "transcript": "ENST00000682266.1",
          "protein_id": "ENSP00000507766.1",
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        },
        {
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          "strand": true,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ANO5",
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        },
        {
          "aa_ref": "T",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ANO5",
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          "hgvs_c": "c.1806G>A",
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "c.1770G>A",
          "hgvs_p": "p.Thr590Thr",
          "transcript": "NM_001441302.1",
          "protein_id": "NP_001428231.1",
          "transcript_support_level": null,
          "aa_start": 590,
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          "aa_length": 751,
          "cds_start": 1770,
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          "cdna_start": 2178,
          "cdna_end": null,
          "cdna_length": 6256,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
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        {
          "aa_ref": "T",
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          "exon_count": 5,
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          "gene_symbol": "ANO5",
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          "hgvs_c": "n.273G>A",
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          "transcript": "ENST00000532043.2",
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          "transcript_support_level": 3,
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        },
        {
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          "consequences": [
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          "exon_rank": 22,
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          "gene_symbol": "ANO5",
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          "hgvs_c": "n.2591G>A",
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          "transcript": "ENST00000648804.1",
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        },
        {
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          "consequences": [
            "non_coding_transcript_exon_variant"
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          "gene_symbol": "ANO5",
          "gene_hgnc_id": 27337,
          "hgvs_c": "n.3250G>A",
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          "transcript": "ENST00000683613.1",
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 7315,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "ANO5",
      "gene_hgnc_id": 27337,
      "dbsnp": "rs144048656",
      "frequency_reference_population": 0.0010075485,
      "hom_count_reference_population": 19,
      "allele_count_reference_population": 1610,
      "gnomad_exomes_af": 0.00104854,
      "gnomad_genomes_af": 0.000612468,
      "gnomad_exomes_ac": 1518,
      "gnomad_genomes_ac": 92,
      "gnomad_exomes_homalt": 19,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5799999833106995,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.58,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.264,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -14,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -14,
          "benign_score": 14,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000324559.9",
          "gene_symbol": "ANO5",
          "hgnc_id": 27337,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.2256G>A",
          "hgvs_p": "p.Thr752Thr"
        }
      ],
      "clinvar_disease": "ANO5-Related Muscle Diseases,Autosomal recessive limb-girdle muscular dystrophy type 2L,Gnathodiaphyseal dysplasia,Miyoshi muscular dystrophy 3,not provided,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:2 B:6",
      "phenotype_combined": "not specified|Gnathodiaphyseal dysplasia;Autosomal recessive limb-girdle muscular dystrophy type 2L|not provided|Autosomal recessive limb-girdle muscular dystrophy type 2L|ANO5-Related Muscle Diseases|Gnathodiaphyseal dysplasia|Miyoshi muscular dystrophy 3",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}