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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-2312445-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=2312445&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 2312445,
"ref": "A",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000182290.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.355-1209A>T",
"hgvs_p": null,
"transcript": "NM_139022.3",
"protein_id": "NP_620591.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 320,
"cds_start": -4,
"cds_end": null,
"cds_length": 963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1380,
"mane_select": "ENST00000182290.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.355-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000182290.9",
"protein_id": "ENSP00000182290.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 320,
"cds_start": -4,
"cds_end": null,
"cds_length": 963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1380,
"mane_select": "NM_139022.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.190-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000381117.1",
"protein_id": "ENSP00000370509.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 265,
"cds_start": -4,
"cds_end": null,
"cds_length": 798,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 798,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.355-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000446063.6",
"protein_id": "ENSP00000395018.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1262,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.283-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000483227.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.322-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000451520.6",
"protein_id": "ENSP00000405205.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 309,
"cds_start": -4,
"cds_end": null,
"cds_length": 930,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1236,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.190-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000612299.4",
"protein_id": "ENSP00000482901.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 265,
"cds_start": -4,
"cds_end": null,
"cds_length": 798,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1301,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.355-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000381121.7",
"protein_id": "ENSP00000370513.3",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 253,
"cds_start": -4,
"cds_end": null,
"cds_length": 762,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 999,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.322-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000339046.8",
"protein_id": "ENSP00000343285.4",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1202,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.568-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000461200.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 3325,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.465-1209A>T",
"hgvs_p": null,
"transcript": "ENST00000479508.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 4,
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"gene_symbol": "TSPAN32",
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"hgvs_c": "n.474-1209A>T",
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"transcript": "ENST00000484104.5",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
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"gene_symbol": "TSPAN32",
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"hgvs_c": "n.122-1209A>T",
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"transcript": "ENST00000484523.1",
"protein_id": null,
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"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "TSPAN32",
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"hgvs_c": "n.486-1209A>T",
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"transcript": "ENST00000493924.5",
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},
{
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],
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"gene_symbol": "TSPAN32",
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
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],
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"exon_count": 7,
"intron_rank": 4,
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"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "n.364-1209A>T",
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"transcript": "ENST00000498313.5",
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},
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],
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"gene_symbol": "TSPAN32",
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"hgvs_c": "c.514-1209A>T",
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"transcript": "XM_017017064.2",
"protein_id": "XP_016872553.1",
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},
{
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"strand": true,
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],
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"exon_count": 9,
"intron_rank": 4,
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"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.460-1209A>T",
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"transcript": "XM_005252719.5",
"protein_id": "XP_005252776.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
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"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.514-1209A>T",
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"transcript": "XM_017017065.2",
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],
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],
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"gene_symbol": "TSPAN32",
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"hgvs_c": "c.385-1209A>T",
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},
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],
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"intron_rank": 3,
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"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.385-1209A>T",
"hgvs_p": null,
"transcript": "XM_011519818.4",
"protein_id": "XP_011518120.4",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TSPAN32",
"gene_hgnc_id": 13410,
"hgvs_c": "c.265-1209A>T",
"hgvs_p": null,
"transcript": "XM_011519819.2",
"protein_id": "XP_011518121.1",
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},
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}