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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-35219682-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=35219682&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 35219682,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000428726.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1945+295T>C",
"hgvs_p": null,
"transcript": "NM_000610.4",
"protein_id": "NP_000601.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 742,
"cds_start": -4,
"cds_end": null,
"cds_length": 2229,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5431,
"mane_select": "ENST00000428726.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1945+295T>C",
"hgvs_p": null,
"transcript": "ENST00000428726.8",
"protein_id": "ENSP00000398632.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 742,
"cds_start": -4,
"cds_end": null,
"cds_length": 2229,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5431,
"mane_select": "NM_000610.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1816+295T>C",
"hgvs_p": null,
"transcript": "ENST00000415148.6",
"protein_id": "ENSP00000389830.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 699,
"cds_start": -4,
"cds_end": null,
"cds_length": 2100,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2369,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1198+295T>C",
"hgvs_p": null,
"transcript": "ENST00000433892.6",
"protein_id": "ENSP00000392331.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 493,
"cds_start": -4,
"cds_end": null,
"cds_length": 1482,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2292,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1006+295T>C",
"hgvs_p": null,
"transcript": "ENST00000434472.6",
"protein_id": "ENSP00000404447.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 429,
"cds_start": -4,
"cds_end": null,
"cds_length": 1290,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1634,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.802+295T>C",
"hgvs_p": null,
"transcript": "ENST00000263398.11",
"protein_id": "ENSP00000263398.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 361,
"cds_start": -4,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4288,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.739+295T>C",
"hgvs_p": null,
"transcript": "ENST00000352818.8",
"protein_id": "ENSP00000309732.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 340,
"cds_start": -4,
"cds_end": null,
"cds_length": 1023,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1023,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.799+295T>C",
"hgvs_p": null,
"transcript": "ENST00000442151.6",
"protein_id": "ENSP00000398099.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 293,
"cds_start": -4,
"cds_end": null,
"cds_length": 882,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1825,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.234-2023T>C",
"hgvs_p": null,
"transcript": "ENST00000278386.10",
"protein_id": "ENSP00000278386.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 139,
"cds_start": -4,
"cds_end": null,
"cds_length": 420,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 484,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "n.*425+295T>C",
"hgvs_p": null,
"transcript": "ENST00000425428.6",
"protein_id": "ENSP00000395953.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1768,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1948+295T>C",
"hgvs_p": null,
"transcript": "NM_001440324.1",
"protein_id": "NP_001427253.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 743,
"cds_start": -4,
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"cds_length": 2232,
"cdna_start": null,
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"cdna_length": 5434,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1942+295T>C",
"hgvs_p": null,
"transcript": "NM_001440325.1",
"protein_id": "NP_001427254.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1855+295T>C",
"hgvs_p": null,
"transcript": "NM_001440326.1",
"protein_id": "NP_001427255.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 712,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 5341,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 15,
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"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1819+295T>C",
"hgvs_p": null,
"transcript": "NM_001440327.1",
"protein_id": "NP_001427256.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
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"exon_count": 17,
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"gene_symbol": "CD44",
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"hgvs_c": "c.1816+295T>C",
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"transcript": "NM_001001389.2",
"protein_id": "NP_001001389.1",
"transcript_support_level": null,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1816+295T>C",
"hgvs_p": null,
"transcript": "NM_001440328.1",
"protein_id": "NP_001427257.1",
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},
{
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],
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"gene_symbol": "CD44",
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"hgvs_c": "c.1807+295T>C",
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"transcript": "NM_001440329.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 15,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1792+295T>C",
"hgvs_p": null,
"transcript": "NM_001440330.1",
"protein_id": "NP_001427259.1",
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "CD44",
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"hgvs_c": "c.1750+295T>C",
"hgvs_p": null,
"transcript": "NM_001440331.1",
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},
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"strand": true,
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],
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"intron_rank": 15,
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"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
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"transcript": "NM_001440332.1",
"protein_id": "NP_001427261.1",
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},
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],
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"gene_symbol": "CD44",
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"hgvs_c": "c.1726+295T>C",
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},
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"strand": true,
"consequences": [
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],
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"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1702+295T>C",
"hgvs_p": null,
"transcript": "NM_001440334.1",
"protein_id": "NP_001427263.1",
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"aa_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "CD44",
"gene_hgnc_id": 1681,
"hgvs_c": "c.1693+295T>C",
"hgvs_p": null,
"transcript": "NM_001440335.1",
"protein_id": "NP_001427264.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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}