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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-47413435-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=47413435&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 47413435,
"ref": "G",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001128225.3",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "NM_001128225.3",
"protein_id": "NP_001121697.2",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 371,
"cds_start": 573,
"cds_end": null,
"cds_length": 1116,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000362021.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001128225.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000362021.9",
"protein_id": "ENSP00000354689.4",
"transcript_support_level": 1,
"aa_start": 191,
"aa_end": null,
"aa_length": 371,
"cds_start": 573,
"cds_end": null,
"cds_length": 1116,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001128225.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000362021.9"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000354884.8",
"protein_id": "ENSP00000346956.4",
"transcript_support_level": 1,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000354884.8"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968896.1",
"protein_id": "ENSP00000638955.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 454,
"cds_start": 573,
"cds_end": null,
"cds_length": 1365,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968896.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869742.1",
"protein_id": "ENSP00000539801.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 385,
"cds_start": 573,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869742.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968897.1",
"protein_id": "ENSP00000638956.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 385,
"cds_start": 573,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968897.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968898.1",
"protein_id": "ENSP00000638957.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 384,
"cds_start": 573,
"cds_end": null,
"cds_length": 1155,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968898.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968900.1",
"protein_id": "ENSP00000638959.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 371,
"cds_start": 573,
"cds_end": null,
"cds_length": 1116,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968900.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "NM_001441271.1",
"protein_id": "NP_001428200.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001441271.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "NM_152264.5",
"protein_id": "NP_689477.3",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_152264.5"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869741.1",
"protein_id": "ENSP00000539800.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869741.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869743.1",
"protein_id": "ENSP00000539802.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869743.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869744.1",
"protein_id": "ENSP00000539803.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869744.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869745.1",
"protein_id": "ENSP00000539804.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869745.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869746.1",
"protein_id": "ENSP00000539805.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869746.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000869747.1",
"protein_id": "ENSP00000539806.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869747.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000911862.1",
"protein_id": "ENSP00000581921.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911862.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000911864.1",
"protein_id": "ENSP00000581923.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911864.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000911865.1",
"protein_id": "ENSP00000581924.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911865.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000911866.1",
"protein_id": "ENSP00000581925.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911866.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968895.1",
"protein_id": "ENSP00000638954.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 364,
"cds_start": 573,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968895.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC39A13",
"gene_hgnc_id": 20859,
"hgvs_c": "c.573G>T",
"hgvs_p": "p.Ala191Ala",
"transcript": "ENST00000968891.1",
"protein_id": "ENSP00000638950.1",
"transcript_support_level": null,
"aa_start": 191,
"aa_end": null,
"aa_length": 363,
"cds_start": 573,
"cds_end": null,
"cds_length": 1092,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
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}
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}