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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-47575680-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=47575680&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 47575680,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_001318716.2",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.657G>C",
"hgvs_p": "p.Gln219His",
"transcript": "NM_018095.6",
"protein_id": "NP_060565.4",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 534,
"cds_start": 657,
"cds_end": null,
"cds_length": 1605,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000430070.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018095.6"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.657G>C",
"hgvs_p": "p.Gln219His",
"transcript": "ENST00000430070.7",
"protein_id": "ENSP00000415106.2",
"transcript_support_level": 1,
"aa_start": 219,
"aa_end": null,
"aa_length": 534,
"cds_start": 657,
"cds_end": null,
"cds_length": 1605,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_018095.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000430070.7"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.684G>C",
"hgvs_p": "p.Gln228His",
"transcript": "ENST00000533290.5",
"protein_id": "ENSP00000436713.1",
"transcript_support_level": 1,
"aa_start": 228,
"aa_end": null,
"aa_length": 543,
"cds_start": 684,
"cds_end": null,
"cds_length": 1632,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000533290.5"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.756G>C",
"hgvs_p": "p.Gln252His",
"transcript": "NM_001318716.2",
"protein_id": "NP_001305645.1",
"transcript_support_level": null,
"aa_start": 252,
"aa_end": null,
"aa_length": 567,
"cds_start": 756,
"cds_end": null,
"cds_length": 1704,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318716.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.726G>C",
"hgvs_p": "p.Gln242His",
"transcript": "NM_001318717.2",
"protein_id": "NP_001305646.1",
"transcript_support_level": null,
"aa_start": 242,
"aa_end": null,
"aa_length": 557,
"cds_start": 726,
"cds_end": null,
"cds_length": 1674,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318717.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.684G>C",
"hgvs_p": "p.Gln228His",
"transcript": "NM_001318718.2",
"protein_id": "NP_001305647.1",
"transcript_support_level": null,
"aa_start": 228,
"aa_end": null,
"aa_length": 543,
"cds_start": 684,
"cds_end": null,
"cds_length": 1632,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318718.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.684G>C",
"hgvs_p": "p.Gln228His",
"transcript": "NM_001318719.2",
"protein_id": "NP_001305648.1",
"transcript_support_level": null,
"aa_start": 228,
"aa_end": null,
"aa_length": 543,
"cds_start": 684,
"cds_end": null,
"cds_length": 1632,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318719.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.678G>C",
"hgvs_p": "p.Gln226His",
"transcript": "NM_001318720.2",
"protein_id": "NP_001305649.1",
"transcript_support_level": null,
"aa_start": 226,
"aa_end": null,
"aa_length": 541,
"cds_start": 678,
"cds_end": null,
"cds_length": 1626,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318720.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_001318721.2",
"protein_id": "NP_001305650.1",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318721.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_001318722.2",
"protein_id": "NP_001305651.1",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318722.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_001318723.2",
"protein_id": "NP_001305652.1",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318723.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_001318724.2",
"protein_id": "NP_001305653.1",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318724.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_001318725.2",
"protein_id": "NP_001305654.1",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318725.2"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "NM_016506.7",
"protein_id": "NP_057590.3",
"transcript_support_level": null,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016506.7"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "ENST00000395288.6",
"protein_id": "ENSP00000378703.2",
"transcript_support_level": 2,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000395288.6"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.609G>C",
"hgvs_p": "p.Gln203His",
"transcript": "ENST00000526005.5",
"protein_id": "ENSP00000433340.1",
"transcript_support_level": 5,
"aa_start": 203,
"aa_end": null,
"aa_length": 518,
"cds_start": 609,
"cds_end": null,
"cds_length": 1557,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000526005.5"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.204G>C",
"hgvs_p": "p.Gln68His",
"transcript": "ENST00000962990.1",
"protein_id": "ENSP00000633049.1",
"transcript_support_level": null,
"aa_start": 68,
"aa_end": null,
"aa_length": 383,
"cds_start": 204,
"cds_end": null,
"cds_length": 1152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962990.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.756G>C",
"hgvs_p": "p.Gln252His",
"transcript": "ENST00000525720.1",
"protein_id": "ENSP00000434477.1",
"transcript_support_level": 3,
"aa_start": 252,
"aa_end": null,
"aa_length": 286,
"cds_start": 756,
"cds_end": null,
"cds_length": 861,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000525720.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "c.20-2539G>C",
"hgvs_p": null,
"transcript": "ENST00000915129.1",
"protein_id": "ENSP00000585188.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 76,
"cds_start": null,
"cds_end": null,
"cds_length": 231,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000915129.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "n.*610G>C",
"hgvs_p": null,
"transcript": "ENST00000530668.1",
"protein_id": "ENSP00000435850.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000530668.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"hgvs_c": "n.*610G>C",
"hgvs_p": null,
"transcript": "ENST00000530668.1",
"protein_id": "ENSP00000435850.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000530668.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NDUFS3",
"gene_hgnc_id": 7710,
"hgvs_c": "n.815+3937C>G",
"hgvs_p": null,
"transcript": "ENST00000533507.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000533507.5"
}
],
"gene_symbol": "KBTBD4",
"gene_hgnc_id": 23761,
"dbsnp": null,
"frequency_reference_population": 6.85904e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.85904e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5390762686729431,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.432,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.7058,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 4.396,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001318716.2",
"gene_symbol": "KBTBD4",
"hgnc_id": 23761,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.756G>C",
"hgvs_p": "p.Gln252His"
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000533507.5",
"gene_symbol": "NDUFS3",
"hgnc_id": 7710,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "n.815+3937C>G",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}