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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-61008714-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=61008714&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 61008714,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000313421.11",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "NM_006725.5",
          "protein_id": "NP_006716.3",
          "transcript_support_level": null,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 668,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 2007,
          "cdna_start": 836,
          "cdna_end": null,
          "cdna_length": 3252,
          "mane_select": "ENST00000313421.11",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "ENST00000313421.11",
          "protein_id": "ENSP00000323280.7",
          "transcript_support_level": 1,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 668,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 2007,
          "cdna_start": 836,
          "cdna_end": null,
          "cdna_length": 3252,
          "mane_select": "NM_006725.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "ENST00000352009.9",
          "protein_id": "ENSP00000340628.5",
          "transcript_support_level": 1,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 601,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 1806,
          "cdna_start": 650,
          "cdna_end": null,
          "cdna_length": 1809,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "ENST00000452451.6",
          "protein_id": "ENSP00000390676.2",
          "transcript_support_level": 1,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 592,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 1779,
          "cdna_start": 650,
          "cdna_end": null,
          "cdna_length": 1782,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "ENST00000542157.5",
          "protein_id": "ENSP00000440055.1",
          "transcript_support_level": 1,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 277,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 835,
          "cdna_start": 650,
          "cdna_end": null,
          "cdna_length": 835,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "NM_001254750.2",
          "protein_id": "NP_001241679.1",
          "transcript_support_level": null,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 601,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 1806,
          "cdna_start": 836,
          "cdna_end": null,
          "cdna_length": 3051,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "NM_001254751.2",
          "protein_id": "NP_001241680.1",
          "transcript_support_level": null,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 592,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 1779,
          "cdna_start": 836,
          "cdna_end": null,
          "cdna_length": 3024,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "ENST00000433107.6",
          "protein_id": "ENSP00000410638.2",
          "transcript_support_level": 5,
          "aa_start": 217,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": 650,
          "cds_end": null,
          "cds_length": 1268,
          "cdna_start": 650,
          "cdna_end": null,
          "cdna_length": 1268,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.179C>G",
          "hgvs_p": "p.Thr60Arg",
          "transcript": "ENST00000538611.1",
          "protein_id": "ENSP00000443747.1",
          "transcript_support_level": 4,
          "aa_start": 60,
          "aa_end": null,
          "aa_length": 183,
          "cds_start": 179,
          "cds_end": null,
          "cds_length": 554,
          "cdna_start": 181,
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          "cdna_length": 556,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD6",
          "gene_hgnc_id": 1691,
          "hgvs_c": "c.650C>G",
          "hgvs_p": "p.Thr217Arg",
          "transcript": "XM_011545360.3",
          "protein_id": "XP_011543662.1",
          "transcript_support_level": null,
          "aa_start": 217,
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          "aa_length": 667,
          "cds_start": 650,
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        {
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          "intron_rank": null,
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          "gene_symbol": "CD6",
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          "protein_id": "XP_006718801.1",
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          "cdna_start": 836,
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          "biotype": null,
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        {
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          "gene_symbol": "CD6",
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        {
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        {
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          "gene_symbol": "CD6",
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
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          "gene_symbol": "CD6",
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          "hgvs_c": "c.650C>G",
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      ],
      "gene_symbol": "CD6",
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      "dbsnp": "rs11230562",
      "frequency_reference_population": 6.87617e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.87617e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.2548712491989136,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.029999999329447746,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.092,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1092,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.48,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.764,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.03,
      "spliceai_max_prediction": "Benign",
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      "mitotip_score": null,
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      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
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          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000313421.11",
          "gene_symbol": "CD6",
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          "inheritance_mode": "AR",
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          "hgvs_p": "p.Thr217Arg"
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}