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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-61956964-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=61956964&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM1",
            "PM2",
            "PM5",
            "PP2",
            "PP3_Strong"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "BEST1",
          "hgnc_id": 12703,
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "inheritance_mode": "AR,AD",
          "pathogenic_score": 11,
          "score": 11,
          "transcript": "NM_001440571.1",
          "verdict": "Pathogenic"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3_Strong"
          ],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "LOC107984334",
          "hgnc_id": null,
          "hgvs_c": "n.1730A>C",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 6,
          "score": 6,
          "transcript": "XR_001748245.2",
          "verdict": "Likely_pathogenic"
        }
      ],
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PM1,PM2,PM5,PP2,PP3_Strong",
      "acmg_score": 11,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.9717,
      "alt": "G",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.58,
      "chr": "11",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "Retinal dystrophy",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.974663496017456,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 585,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2210,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1758,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_004183.4",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000378043.9",
          "protein_coding": true,
          "protein_id": "NP_004174.1",
          "strand": true,
          "transcript": "NM_004183.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 585,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2210,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1758,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000378043.9",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_004183.4",
          "protein_coding": true,
          "protein_id": "ENSP00000367282.4",
          "strand": true,
          "transcript": "ENST00000378043.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 604,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4267,
          "cdna_start": 508,
          "cds_end": null,
          "cds_length": 1815,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000449131.6",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000399709.2",
          "strand": true,
          "transcript": "ENST00000449131.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 664,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3420,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1995,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001440571.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427500.1",
          "strand": true,
          "transcript": "NM_001440571.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 637,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3339,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1914,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001440572.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427501.1",
          "strand": true,
          "transcript": "NM_001440572.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 613,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3267,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1842,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001440573.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427502.1",
          "strand": true,
          "transcript": "NM_001440573.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 604,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3232,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1815,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001139443.3",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001132915.1",
          "strand": true,
          "transcript": "NM_001139443.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 577,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3151,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1734,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001440574.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427503.1",
          "strand": true,
          "transcript": "NM_001440574.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 558,
          "aa_ref": "I",
          "aa_start": 95,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3213,
          "cdna_start": 508,
          "cds_end": null,
          "cds_length": 1677,
          "cds_start": 284,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001363591.3",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.284T>G",
          "hgvs_p": "p.Ile95Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350520.1",
          "strand": true,
          "transcript": "NM_001363591.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 553,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3079,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1662,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001440575.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427504.1",
          "strand": true,
          "transcript": "NM_001440575.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 526,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2998,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1581,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001440576.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001427505.1",
          "strand": true,
          "transcript": "NM_001440576.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 525,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2022,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1578,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001300787.2",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001287716.1",
          "strand": true,
          "transcript": "NM_001300787.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 498,
          "aa_ref": "I",
          "aa_start": 141,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1941,
          "cdna_start": 527,
          "cds_end": null,
          "cds_length": 1497,
          "cds_start": 422,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001300786.2",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.422T>G",
          "hgvs_p": "p.Ile141Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001287715.1",
          "strand": true,
          "transcript": "NM_001300786.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 435,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3623,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1308,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001363592.2",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350521.1",
          "strand": true,
          "transcript": "NM_001363592.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 329,
          "aa_ref": "I",
          "aa_start": 95,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1263,
          "cdna_start": 445,
          "cds_end": null,
          "cds_length": 990,
          "cds_start": 284,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000526988.1",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.284T>G",
          "hgvs_p": "p.Ile95Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000433195.1",
          "strand": true,
          "transcript": "ENST00000526988.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 270,
          "aa_ref": "I",
          "aa_start": 201,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4618,
          "cdna_start": 1245,
          "cds_end": null,
          "cds_length": 813,
          "cds_start": 602,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "XM_005274221.5",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.602T>G",
          "hgvs_p": "p.Ile201Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_005274278.1",
          "strand": true,
          "transcript": "XM_005274221.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 340,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3416,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1023,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001363593.3",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.-574T>G",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350522.1",
          "strand": true,
          "transcript": "NM_001363593.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 55,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1829,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 168,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 5,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000534553.5",
          "gene_hgnc_id": 12703,
          "gene_symbol": "BEST1",
          "hgvs_c": "c.163+1013T>G",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000431189.1",
          "strand": true,
          "transcript": "ENST00000534553.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5772,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.