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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-63895601-A-AAG (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=63895601&ref=A&alt=AAG&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 63895601,
"ref": "A",
"alt": "AAG",
"effect": "frameshift_variant",
"transcript": "NM_001039469.3",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "NM_001039469.3",
"protein_id": "NP_001034558.2",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 788,
"cds_start": 260,
"cds_end": null,
"cds_length": 2367,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000402010.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001039469.3"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000402010.8",
"protein_id": "ENSP00000385751.2",
"transcript_support_level": 1,
"aa_start": 87,
"aa_end": null,
"aa_length": 788,
"cds_start": 260,
"cds_end": null,
"cds_length": 2367,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001039469.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000402010.8"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000513765.7",
"protein_id": "ENSP00000421075.3",
"transcript_support_level": 1,
"aa_start": 87,
"aa_end": null,
"aa_length": 779,
"cds_start": 260,
"cds_end": null,
"cds_length": 2340,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000513765.7"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000425897.3",
"protein_id": "ENSP00000415494.3",
"transcript_support_level": 1,
"aa_start": 87,
"aa_end": null,
"aa_length": 763,
"cds_start": 260,
"cds_end": null,
"cds_length": 2292,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000425897.3"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000361128.9",
"protein_id": "ENSP00000355091.5",
"transcript_support_level": 1,
"aa_start": 87,
"aa_end": null,
"aa_length": 719,
"cds_start": 260,
"cds_end": null,
"cds_length": 2160,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000361128.9"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000350490.11",
"protein_id": "ENSP00000294247.9",
"transcript_support_level": 1,
"aa_start": 87,
"aa_end": null,
"aa_length": 709,
"cds_start": 260,
"cds_end": null,
"cds_length": 2130,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000350490.11"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.159_160dupGA",
"hgvs_p": "p.Thr54fs",
"transcript": "ENST00000408948.7",
"protein_id": "ENSP00000386128.3",
"transcript_support_level": 1,
"aa_start": 54,
"aa_end": null,
"aa_length": 691,
"cds_start": 161,
"cds_end": null,
"cds_length": 2076,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000408948.7"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000906218.1",
"protein_id": "ENSP00000576277.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 787,
"cds_start": 260,
"cds_end": null,
"cds_length": 2364,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906218.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000502399.7",
"protein_id": "ENSP00000423452.3",
"transcript_support_level": 5,
"aa_start": 87,
"aa_end": null,
"aa_length": 778,
"cds_start": 260,
"cds_end": null,
"cds_length": 2337,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000502399.7"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000906219.1",
"protein_id": "ENSP00000576278.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 772,
"cds_start": 260,
"cds_end": null,
"cds_length": 2319,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906219.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000911907.1",
"protein_id": "ENSP00000581966.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 766,
"cds_start": 260,
"cds_end": null,
"cds_length": 2301,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911907.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000911905.1",
"protein_id": "ENSP00000581964.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 764,
"cds_start": 260,
"cds_end": null,
"cds_length": 2295,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911905.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.159_160dupGA",
"hgvs_p": "p.Thr54fs",
"transcript": "NM_017490.4",
"protein_id": "NP_059672.2",
"transcript_support_level": null,
"aa_start": 54,
"aa_end": null,
"aa_length": 745,
"cds_start": 161,
"cds_end": null,
"cds_length": 2238,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017490.4"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.159_160dupGA",
"hgvs_p": "p.Thr54fs",
"transcript": "ENST00000509502.6",
"protein_id": "ENSP00000423974.2",
"transcript_support_level": 2,
"aa_start": 54,
"aa_end": null,
"aa_length": 745,
"cds_start": 161,
"cds_end": null,
"cds_length": 2238,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000509502.6"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000911904.1",
"protein_id": "ENSP00000581963.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 734,
"cds_start": 260,
"cds_end": null,
"cds_length": 2205,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911904.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000906217.1",
"protein_id": "ENSP00000576276.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 733,
"cds_start": 260,
"cds_end": null,
"cds_length": 2202,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906217.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000377810.8",
"protein_id": "ENSP00000367041.5",
"transcript_support_level": 5,
"aa_start": 87,
"aa_end": null,
"aa_length": 732,
"cds_start": 260,
"cds_end": null,
"cds_length": 2199,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377810.8"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000906220.1",
"protein_id": "ENSP00000576279.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 725,
"cds_start": 260,
"cds_end": null,
"cds_length": 2178,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906220.1"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "NM_004954.5",
"protein_id": "NP_004945.4",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 724,
"cds_start": 260,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_004954.5"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000508192.5",
"protein_id": "ENSP00000425765.1",
"transcript_support_level": 5,
"aa_start": 87,
"aa_end": null,
"aa_length": 724,
"cds_start": 260,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000508192.5"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "NM_001163296.2",
"protein_id": "NP_001156768.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 719,
"cds_start": 260,
"cds_end": null,
"cds_length": 2160,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001163296.2"
},
{
"aa_ref": "T",
"aa_alt": "R?",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MARK2",
"gene_hgnc_id": 3332,
"hgvs_c": "c.258_259dupGA",
"hgvs_p": "p.Thr87fs",
"transcript": "ENST00000679216.1",
"protein_id": "ENSP00000504337.1",
"transcript_support_level": null,
"aa_start": 87,
"aa_end": null,
"aa_length": 718,
"cds_start": 260,
"cds_end": null,
"cds_length": 2157,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
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],
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{
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"PM2",
"PP5"
],
"verdict": "Pathogenic",
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],
"clinvar_disease": "Autism spectrum disorder",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Autism spectrum disorder",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}