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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-65540929-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=65540929&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 65540929,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001130144.3",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2919C>G",
          "hgvs_p": "p.Asp973Glu",
          "transcript": "NM_001130144.3",
          "protein_id": "NP_001123616.1",
          "transcript_support_level": null,
          "aa_start": 973,
          "aa_end": null,
          "aa_length": 1303,
          "cds_start": 2919,
          "cds_end": null,
          "cds_length": 3912,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000301873.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001130144.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2919C>G",
          "hgvs_p": "p.Asp973Glu",
          "transcript": "ENST00000301873.11",
          "protein_id": "ENSP00000301873.5",
          "transcript_support_level": 2,
          "aa_start": 973,
          "aa_end": null,
          "aa_length": 1303,
          "cds_start": 2919,
          "cds_end": null,
          "cds_length": 3912,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001130144.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000301873.11"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2919C>G",
          "hgvs_p": "p.Asp973Glu",
          "transcript": "ENST00000322147.8",
          "protein_id": "ENSP00000326647.4",
          "transcript_support_level": 1,
          "aa_start": 973,
          "aa_end": null,
          "aa_length": 1256,
          "cds_start": 2919,
          "cds_end": null,
          "cds_length": 3771,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000322147.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.*2564C>G",
          "hgvs_p": null,
          "transcript": "ENST00000528516.5",
          "protein_id": "ENSP00000432350.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000528516.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.*2564C>G",
          "hgvs_p": null,
          "transcript": "ENST00000528516.5",
          "protein_id": "ENSP00000432350.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000528516.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2946C>G",
          "hgvs_p": "p.Asp982Glu",
          "transcript": "ENST00000971648.1",
          "protein_id": "ENSP00000641707.1",
          "transcript_support_level": null,
          "aa_start": 982,
          "aa_end": null,
          "aa_length": 1312,
          "cds_start": 2946,
          "cds_end": null,
          "cds_length": 3939,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971648.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2916C>G",
          "hgvs_p": "p.Asp972Glu",
          "transcript": "ENST00000971647.1",
          "protein_id": "ENSP00000641706.1",
          "transcript_support_level": null,
          "aa_start": 972,
          "aa_end": null,
          "aa_length": 1302,
          "cds_start": 2916,
          "cds_end": null,
          "cds_length": 3909,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971647.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2829C>G",
          "hgvs_p": "p.Asp943Glu",
          "transcript": "ENST00000971650.1",
          "protein_id": "ENSP00000641709.1",
          "transcript_support_level": null,
          "aa_start": 943,
          "aa_end": null,
          "aa_length": 1273,
          "cds_start": 2829,
          "cds_end": null,
          "cds_length": 3822,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971650.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2796C>G",
          "hgvs_p": "p.Asp932Glu",
          "transcript": "ENST00000689505.1",
          "protein_id": "ENSP00000510401.1",
          "transcript_support_level": null,
          "aa_start": 932,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 2796,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000689505.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2796C>G",
          "hgvs_p": "p.Asp932Glu",
          "transcript": "ENST00000971646.1",
          "protein_id": "ENSP00000641705.1",
          "transcript_support_level": null,
          "aa_start": 932,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 2796,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971646.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2796C>G",
          "hgvs_p": "p.Asp932Glu",
          "transcript": "ENST00000971649.1",
          "protein_id": "ENSP00000641708.1",
          "transcript_support_level": null,
          "aa_start": 932,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 2796,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971649.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2919C>G",
          "hgvs_p": "p.Asp973Glu",
          "transcript": "NM_021070.4",
          "protein_id": "NP_066548.2",
          "transcript_support_level": null,
          "aa_start": 973,
          "aa_end": null,
          "aa_length": 1256,
          "cds_start": 2919,
          "cds_end": null,
          "cds_length": 3771,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_021070.4"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2652C>G",
          "hgvs_p": "p.Asp884Glu",
          "transcript": "ENST00000530866.6",
          "protein_id": "ENSP00000435276.2",
          "transcript_support_level": 2,
          "aa_start": 884,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 2652,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000530866.6"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2568C>G",
          "hgvs_p": "p.Asp856Glu",
          "transcript": "NM_001164266.1",
          "protein_id": "NP_001157738.1",
          "transcript_support_level": null,
          "aa_start": 856,
          "aa_end": null,
          "aa_length": 1139,
          "cds_start": 2568,
          "cds_end": null,
          "cds_length": 3420,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001164266.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "c.2064C>G",
          "hgvs_p": "p.Asp688Glu",
          "transcript": "ENST00000526927.6",
          "protein_id": "ENSP00000431219.2",
          "transcript_support_level": 2,
          "aa_start": 688,
          "aa_end": null,
          "aa_length": 971,
          "cds_start": 2064,
          "cds_end": null,
          "cds_length": 2916,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000526927.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.215C>G",
          "hgvs_p": null,
          "transcript": "ENST00000526124.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000526124.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.*2182C>G",
          "hgvs_p": null,
          "transcript": "ENST00000526825.6",
          "protein_id": "ENSP00000435146.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000526825.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.884C>G",
          "hgvs_p": null,
          "transcript": "ENST00000529189.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000529189.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.961C>G",
          "hgvs_p": null,
          "transcript": "ENST00000529582.6",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000529582.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LTBP3",
          "gene_hgnc_id": 6716,
          "hgvs_c": "n.1207C>G",
          "hgvs_p": null,
          "transcript": "ENST00000530785.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
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      ],
      "gene_symbol": "LTBP3",
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      "dbsnp": "rs145041278",
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.18099018931388855,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.424,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.3256,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.16,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -1.145,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate",
      "acmg_by_gene": [
        {
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          "verdict": "Likely_benign",
          "transcript": "NM_001130144.3",
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          "hgvs_c": "c.2919C>G",
          "hgvs_p": "p.Asp973Glu"
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      ],
      "clinvar_disease": "Brachyolmia-amelogenesis imperfecta syndrome,Inborn genetic diseases",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:2",
      "phenotype_combined": "Brachyolmia-amelogenesis imperfecta syndrome|Inborn genetic diseases",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.