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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-66003259-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=66003259&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 66003259,
"ref": "C",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_003860.4",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "NM_003860.4",
"protein_id": "NP_003851.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000312175.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003860.4"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000312175.7",
"protein_id": "ENSP00000310275.2",
"transcript_support_level": 1,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_003860.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000312175.7"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000445560.6",
"protein_id": "ENSP00000416128.2",
"transcript_support_level": 1,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000445560.6"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "NM_001143985.2",
"protein_id": "NP_001137457.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001143985.2"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "NM_001440618.1",
"protein_id": "NP_001427547.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001440618.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "NM_001440619.1",
"protein_id": "NP_001427548.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001440619.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000527348.1",
"protein_id": "ENSP00000432867.1",
"transcript_support_level": 3,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000527348.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000533166.5",
"protein_id": "ENSP00000433760.1",
"transcript_support_level": 2,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000533166.5"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894314.1",
"protein_id": "ENSP00000564373.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894314.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894315.1",
"protein_id": "ENSP00000564374.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894315.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894316.1",
"protein_id": "ENSP00000564375.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894316.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894317.1",
"protein_id": "ENSP00000564376.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894317.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894318.1",
"protein_id": "ENSP00000564377.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894318.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894319.1",
"protein_id": "ENSP00000564378.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894319.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894320.1",
"protein_id": "ENSP00000564379.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894320.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000894321.1",
"protein_id": "ENSP00000564380.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000894321.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935797.1",
"protein_id": "ENSP00000605856.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935797.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935798.1",
"protein_id": "ENSP00000605857.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935798.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935799.1",
"protein_id": "ENSP00000605858.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935799.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935800.1",
"protein_id": "ENSP00000605859.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935800.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935801.1",
"protein_id": "ENSP00000605860.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935801.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BANF1",
"gene_hgnc_id": 17397,
"hgvs_c": "c.9C>A",
"hgvs_p": "p.Thr3Thr",
"transcript": "ENST00000935804.1",
"protein_id": "ENSP00000605863.1",
"transcript_support_level": null,
"aa_start": 3,
"aa_end": null,
"aa_length": 89,
"cds_start": 9,
"cds_end": null,
"cds_length": 270,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
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},
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}
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}