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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-68936797-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=68936797&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 68936797,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_002180.3",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.2317G>T",
"hgvs_p": "p.Gly773Trp",
"transcript": "NM_002180.3",
"protein_id": "NP_002171.2",
"transcript_support_level": null,
"aa_start": 773,
"aa_end": null,
"aa_length": 993,
"cds_start": 2317,
"cds_end": null,
"cds_length": 2982,
"cdna_start": 2379,
"cdna_end": null,
"cdna_length": 3914,
"mane_select": "ENST00000255078.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.2317G>T",
"hgvs_p": "p.Gly773Trp",
"transcript": "ENST00000255078.8",
"protein_id": "ENSP00000255078.4",
"transcript_support_level": 1,
"aa_start": 773,
"aa_end": null,
"aa_length": 993,
"cds_start": 2317,
"cds_end": null,
"cds_length": 2982,
"cdna_start": 2379,
"cdna_end": null,
"cdna_length": 3914,
"mane_select": "NM_002180.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.2317G>T",
"hgvs_p": "p.Gly773Trp",
"transcript": "ENST00000675615.1",
"protein_id": "ENSP00000502413.1",
"transcript_support_level": null,
"aa_start": 773,
"aa_end": null,
"aa_length": 875,
"cds_start": 2317,
"cds_end": null,
"cds_length": 2628,
"cdna_start": 2407,
"cdna_end": null,
"cdna_length": 2914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.559G>T",
"hgvs_p": "p.Gly187Trp",
"transcript": "ENST00000674675.1",
"protein_id": "ENSP00000502787.1",
"transcript_support_level": null,
"aa_start": 187,
"aa_end": null,
"aa_length": 308,
"cds_start": 559,
"cds_end": null,
"cds_length": 927,
"cdna_start": 561,
"cdna_end": null,
"cdna_length": 929,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.2317G>T",
"hgvs_p": "p.Gly773Trp",
"transcript": "XM_047426881.1",
"protein_id": "XP_047282837.1",
"transcript_support_level": null,
"aa_start": 773,
"aa_end": null,
"aa_length": 956,
"cds_start": 2317,
"cds_end": null,
"cds_length": 2871,
"cdna_start": 2379,
"cdna_end": null,
"cdna_length": 3015,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.1306G>T",
"hgvs_p": "p.Gly436Trp",
"transcript": "XM_017017670.3",
"protein_id": "XP_016873159.1",
"transcript_support_level": null,
"aa_start": 436,
"aa_end": null,
"aa_length": 656,
"cds_start": 1306,
"cds_end": null,
"cds_length": 1971,
"cdna_start": 3571,
"cdna_end": null,
"cdna_length": 5106,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.1189G>T",
"hgvs_p": "p.Gly397Trp",
"transcript": "XM_005273975.4",
"protein_id": "XP_005274032.1",
"transcript_support_level": null,
"aa_start": 397,
"aa_end": null,
"aa_length": 617,
"cds_start": 1189,
"cds_end": null,
"cds_length": 1854,
"cdna_start": 2335,
"cdna_end": null,
"cdna_length": 3870,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "c.1084G>T",
"hgvs_p": "p.Gly362Trp",
"transcript": "XM_011544994.2",
"protein_id": "XP_011543296.1",
"transcript_support_level": null,
"aa_start": 362,
"aa_end": null,
"aa_length": 582,
"cds_start": 1084,
"cds_end": null,
"cds_length": 1749,
"cdna_start": 3788,
"cdna_end": null,
"cdna_length": 5323,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.2076G>T",
"hgvs_p": null,
"transcript": "ENST00000539064.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2346,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.1310G>T",
"hgvs_p": null,
"transcript": "ENST00000543739.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2846,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1034G>T",
"hgvs_p": null,
"transcript": "ENST00000674955.1",
"protein_id": "ENSP00000502463.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2512,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1543G>T",
"hgvs_p": null,
"transcript": "ENST00000675118.1",
"protein_id": "ENSP00000501570.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3340,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.592G>T",
"hgvs_p": null,
"transcript": "ENST00000675389.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 886,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.1692G>T",
"hgvs_p": null,
"transcript": "ENST00000675648.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3414,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.559G>T",
"hgvs_p": null,
"transcript": "ENST00000675916.1",
"protein_id": "ENSP00000501575.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*2758G>T",
"hgvs_p": null,
"transcript": "ENST00000676173.2",
"protein_id": "ENSP00000520445.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4597,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*644G>T",
"hgvs_p": null,
"transcript": "ENST00000676182.1",
"protein_id": "ENSP00000501625.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1042,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1640G>T",
"hgvs_p": null,
"transcript": "ENST00000676228.1",
"protein_id": "ENSP00000502375.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2603,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1034G>T",
"hgvs_p": null,
"transcript": "ENST00000674955.1",
"protein_id": "ENSP00000502463.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 2512,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1543G>T",
"hgvs_p": null,
"transcript": "ENST00000675118.1",
"protein_id": "ENSP00000501570.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 3340,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*2758G>T",
"hgvs_p": null,
"transcript": "ENST00000676173.2",
"protein_id": "ENSP00000520445.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4597,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*644G>T",
"hgvs_p": null,
"transcript": "ENST00000676182.1",
"protein_id": "ENSP00000501625.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1042,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.*1640G>T",
"hgvs_p": null,
"transcript": "ENST00000676228.1",
"protein_id": "ENSP00000502375.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 2603,
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"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
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"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"hgvs_c": "n.545+14G>T",
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"transcript": "ENST00000674878.1",
"protein_id": "ENSP00000501899.1",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 889,
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"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "IGHMBP2",
"gene_hgnc_id": 5542,
"dbsnp": "rs754559345",
"frequency_reference_population": 6.8417705e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.84177e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9683526754379272,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.524,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.8374,
"alphamissense_prediction": "Pathogenic",
"bayesdelnoaf_score": -0.03,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 9.45,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 6,
"acmg_classification": "Likely_pathogenic",
"acmg_criteria": "PM2,PP3_Strong",
"acmg_by_gene": [
{
"score": 6,
"benign_score": 0,
"pathogenic_score": 6,
"criteria": [
"PM2",
"PP3_Strong"
],
"verdict": "Likely_pathogenic",
"transcript": "NM_002180.3",
"gene_symbol": "IGHMBP2",
"hgnc_id": 5542,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2317G>T",
"hgvs_p": "p.Gly773Trp"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}