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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-75790710-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=75790710&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 75790710,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_032564.5",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.408T>C",
"hgvs_p": "p.Phe136Phe",
"transcript": "NM_032564.5",
"protein_id": "NP_115953.2",
"transcript_support_level": null,
"aa_start": 136,
"aa_end": null,
"aa_length": 388,
"cds_start": 408,
"cds_end": null,
"cds_length": 1167,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000228027.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_032564.5"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.408T>C",
"hgvs_p": "p.Phe136Phe",
"transcript": "ENST00000228027.12",
"protein_id": "ENSP00000228027.6",
"transcript_support_level": 1,
"aa_start": 136,
"aa_end": null,
"aa_length": 388,
"cds_start": 408,
"cds_end": null,
"cds_length": 1167,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_032564.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000228027.12"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.279T>C",
"hgvs_p": "p.Phe93Phe",
"transcript": "ENST00000376262.7",
"protein_id": "ENSP00000365438.3",
"transcript_support_level": 1,
"aa_start": 93,
"aa_end": null,
"aa_length": 345,
"cds_start": 279,
"cds_end": null,
"cds_length": 1038,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000376262.7"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.270T>C",
"hgvs_p": "p.Phe90Phe",
"transcript": "ENST00000604733.5",
"protein_id": "ENSP00000474668.1",
"transcript_support_level": 1,
"aa_start": 90,
"aa_end": null,
"aa_length": 294,
"cds_start": 270,
"cds_end": null,
"cds_length": 885,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000604733.5"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.477T>C",
"hgvs_p": "p.Phe159Phe",
"transcript": "ENST00000877418.1",
"protein_id": "ENSP00000547477.1",
"transcript_support_level": null,
"aa_start": 159,
"aa_end": null,
"aa_length": 411,
"cds_start": 477,
"cds_end": null,
"cds_length": 1236,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877418.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.408T>C",
"hgvs_p": "p.Phe136Phe",
"transcript": "ENST00000877419.1",
"protein_id": "ENSP00000547478.1",
"transcript_support_level": null,
"aa_start": 136,
"aa_end": null,
"aa_length": 399,
"cds_start": 408,
"cds_end": null,
"cds_length": 1200,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877419.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.405T>C",
"hgvs_p": "p.Phe135Phe",
"transcript": "ENST00000960982.1",
"protein_id": "ENSP00000631041.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 398,
"cds_start": 405,
"cds_end": null,
"cds_length": 1197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000960982.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.408T>C",
"hgvs_p": "p.Phe136Phe",
"transcript": "ENST00000877421.1",
"protein_id": "ENSP00000547480.1",
"transcript_support_level": null,
"aa_start": 136,
"aa_end": null,
"aa_length": 395,
"cds_start": 408,
"cds_end": null,
"cds_length": 1188,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877421.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.405T>C",
"hgvs_p": "p.Phe135Phe",
"transcript": "ENST00000877420.1",
"protein_id": "ENSP00000547479.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 387,
"cds_start": 405,
"cds_end": null,
"cds_length": 1164,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877420.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.279T>C",
"hgvs_p": "p.Phe93Phe",
"transcript": "NM_001253891.2",
"protein_id": "NP_001240820.1",
"transcript_support_level": null,
"aa_start": 93,
"aa_end": null,
"aa_length": 345,
"cds_start": 279,
"cds_end": null,
"cds_length": 1038,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001253891.2"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.135T>C",
"hgvs_p": "p.Phe45Phe",
"transcript": "ENST00000603276.5",
"protein_id": "ENSP00000474015.1",
"transcript_support_level": 5,
"aa_start": 45,
"aa_end": null,
"aa_length": 159,
"cds_start": 135,
"cds_end": null,
"cds_length": 480,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000603276.5"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.135T>C",
"hgvs_p": "p.Phe45Phe",
"transcript": "ENST00000605099.1",
"protein_id": "ENSP00000475066.1",
"transcript_support_level": 4,
"aa_start": 45,
"aa_end": null,
"aa_length": 112,
"cds_start": 135,
"cds_end": null,
"cds_length": 340,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000605099.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.135T>C",
"hgvs_p": "p.Phe45Phe",
"transcript": "ENST00000604935.5",
"protein_id": "ENSP00000474887.1",
"transcript_support_level": 4,
"aa_start": 45,
"aa_end": null,
"aa_length": 111,
"cds_start": 135,
"cds_end": null,
"cds_length": 337,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000604935.5"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.318T>C",
"hgvs_p": "p.Phe106Phe",
"transcript": "XM_011545304.3",
"protein_id": "XP_011543606.1",
"transcript_support_level": null,
"aa_start": 106,
"aa_end": null,
"aa_length": 358,
"cds_start": 318,
"cds_end": null,
"cds_length": 1077,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011545304.3"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"hgvs_c": "c.135T>C",
"hgvs_p": "p.Phe45Phe",
"transcript": "XM_047427716.1",
"protein_id": "XP_047283672.1",
"transcript_support_level": null,
"aa_start": 45,
"aa_end": null,
"aa_length": 297,
"cds_start": 135,
"cds_end": null,
"cds_length": 894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047427716.1"
}
],
"gene_symbol": "DGAT2",
"gene_hgnc_id": 16940,
"dbsnp": "rs150822096",
"frequency_reference_population": 0.00012885655,
"hom_count_reference_population": 2,
"allele_count_reference_population": 208,
"gnomad_exomes_af": 0.000122445,
"gnomad_genomes_af": 0.000190391,
"gnomad_exomes_ac": 179,
"gnomad_genomes_ac": 29,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 1,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5400000214576721,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.54,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.786,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -11,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Moderate,BP7,BS2",
"acmg_by_gene": [
{
"score": -11,
"benign_score": 11,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Moderate",
"BP7",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_032564.5",
"gene_symbol": "DGAT2",
"hgnc_id": 16940,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.408T>C",
"hgvs_p": "p.Phe136Phe"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "B:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}