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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-76546171-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=76546171&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 76546171,
      "ref": "T",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "ENST00000695367.1",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3693T>A",
          "hgvs_p": "p.Thr1231Thr",
          "transcript": "NM_001300942.2",
          "protein_id": "NP_001287871.1",
          "transcript_support_level": null,
          "aa_start": 1231,
          "aa_end": null,
          "aa_length": 1337,
          "cds_start": 3693,
          "cds_end": null,
          "cds_length": 4014,
          "cdna_start": 3843,
          "cdna_end": null,
          "cdna_length": 7049,
          "mane_select": "ENST00000695367.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3693T>A",
          "hgvs_p": "p.Thr1231Thr",
          "transcript": "ENST00000695367.1",
          "protein_id": "ENSP00000511840.1",
          "transcript_support_level": null,
          "aa_start": 1231,
          "aa_end": null,
          "aa_length": 1337,
          "cds_start": 3693,
          "cds_end": null,
          "cds_length": 4014,
          "cdna_start": 3843,
          "cdna_end": null,
          "cdna_length": 7049,
          "mane_select": "NM_001300942.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3693T>A",
          "hgvs_p": "p.Thr1231Thr",
          "transcript": "ENST00000524767.5",
          "protein_id": "ENSP00000433205.1",
          "transcript_support_level": 1,
          "aa_start": 1231,
          "aa_end": null,
          "aa_length": 1337,
          "cds_start": 3693,
          "cds_end": null,
          "cds_length": 4014,
          "cdna_start": 3732,
          "cdna_end": null,
          "cdna_length": 4116,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3651T>A",
          "hgvs_p": "p.Thr1217Thr",
          "transcript": "ENST00000525038.5",
          "protein_id": "ENSP00000436968.1",
          "transcript_support_level": 1,
          "aa_start": 1217,
          "aa_end": null,
          "aa_length": 1323,
          "cds_start": 3651,
          "cds_end": null,
          "cds_length": 3972,
          "cdna_start": 3690,
          "cdna_end": null,
          "cdna_length": 4376,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3651T>A",
          "hgvs_p": "p.Thr1217Thr",
          "transcript": "ENST00000525919.5",
          "protein_id": "ENSP00000432010.1",
          "transcript_support_level": 1,
          "aa_start": 1217,
          "aa_end": null,
          "aa_length": 1323,
          "cds_start": 3651,
          "cds_end": null,
          "cds_length": 3972,
          "cdna_start": 3690,
          "cdna_end": null,
          "cdna_length": 4074,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3648T>A",
          "hgvs_p": "p.Thr1216Thr",
          "transcript": "ENST00000529032.5",
          "protein_id": "ENSP00000432327.1",
          "transcript_support_level": 1,
          "aa_start": 1216,
          "aa_end": null,
          "aa_length": 1322,
          "cds_start": 3648,
          "cds_end": null,
          "cds_length": 3969,
          "cdna_start": 3648,
          "cdna_end": null,
          "cdna_length": 6848,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3375T>A",
          "hgvs_p": "p.Thr1125Thr",
          "transcript": "ENST00000533248.5",
          "protein_id": "ENSP00000433634.1",
          "transcript_support_level": 1,
          "aa_start": 1125,
          "aa_end": null,
          "aa_length": 1231,
          "cds_start": 3375,
          "cds_end": null,
          "cds_length": 3696,
          "cdna_start": 3414,
          "cdna_end": null,
          "cdna_length": 3798,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.693+1349T>A",
          "hgvs_p": null,
          "transcript": "ENST00000532719.1",
          "protein_id": "ENSP00000436528.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 295,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 888,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1105,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3651T>A",
          "hgvs_p": "p.Thr1217Thr",
          "transcript": "NM_001300943.2",
          "protein_id": "NP_001287872.1",
          "transcript_support_level": null,
          "aa_start": 1217,
          "aa_end": null,
          "aa_length": 1323,
          "cds_start": 3651,
          "cds_end": null,
          "cds_length": 3972,
          "cdna_start": 3801,
          "cdna_end": null,
          "cdna_length": 7007,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3651T>A",
          "hgvs_p": "p.Thr1217Thr",
          "transcript": "NM_001300944.2",
          "protein_id": "NP_001287873.1",
          "transcript_support_level": null,
          "aa_start": 1217,
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          "aa_length": 1323,
          "cds_start": 3651,
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          "cdna_start": 3801,
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          "mane_select": null,
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        },
        {
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "EMSY",
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          "hgvs_c": "c.3648T>A",
          "hgvs_p": "p.Thr1216Thr",
          "transcript": "NM_020193.5",
          "protein_id": "NP_064578.2",
          "transcript_support_level": null,
          "aa_start": 1216,
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          "cds_start": 3648,
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          "cdna_start": 3798,
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        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_count": 21,
          "intron_rank": null,
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          "hgvs_c": "c.3648T>A",
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        {
          "aa_ref": "T",
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          ],
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          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3354T>A",
          "hgvs_p": "p.Thr1118Thr",
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        {
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          "strand": true,
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.222T>A",
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          "protein_id": "ENSP00000436307.1",
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        },
        {
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          "gene_symbol": "EMSY",
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_rank": 20,
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          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3648T>A",
          "hgvs_p": "p.Thr1216Thr",
          "transcript": "XM_047427268.1",
          "protein_id": "XP_047283224.1",
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        },
        {
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          "exon_rank": 21,
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          "intron_rank": null,
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          "gene_symbol": "EMSY",
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        {
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          "intron_rank": null,
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        },
        {
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 20,
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          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "EMSY",
          "gene_hgnc_id": 18071,
          "hgvs_c": "c.3651T>A",
          "hgvs_p": "p.Thr1217Thr",
          "transcript": "XM_047427272.1",
          "protein_id": "XP_047283228.1",
          "transcript_support_level": null,
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          "cds_start": 3651,
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          "cdna_length": 7080,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
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