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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-76861012-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=76861012&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 76861012,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_018367.7",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "NM_018367.7",
"protein_id": "NP_060837.3",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 267,
"cds_start": 36,
"cds_end": null,
"cds_length": 804,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000532485.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018367.7"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000532485.6",
"protein_id": "ENSP00000434480.1",
"transcript_support_level": 1,
"aa_start": 12,
"aa_end": null,
"aa_length": 267,
"cds_start": 36,
"cds_end": null,
"cds_length": 804,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_018367.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000532485.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "n.36C>T",
"hgvs_p": null,
"transcript": "ENST00000278544.9",
"protein_id": "ENSP00000278544.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000278544.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "n.36C>T",
"hgvs_p": null,
"transcript": "ENST00000525194.5",
"protein_id": "ENSP00000432109.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000525194.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "n.36C>T",
"hgvs_p": null,
"transcript": "ENST00000531352.5",
"protein_id": "ENSP00000431504.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000531352.5"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000679754.1",
"protein_id": "ENSP00000505416.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 274,
"cds_start": 36,
"cds_end": null,
"cds_length": 825,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000679754.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000880917.1",
"protein_id": "ENSP00000550976.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 255,
"cds_start": 36,
"cds_end": null,
"cds_length": 768,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880917.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000880916.1",
"protein_id": "ENSP00000550975.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 233,
"cds_start": 36,
"cds_end": null,
"cds_length": 702,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880916.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "NM_001300953.2",
"protein_id": "NP_001287882.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 230,
"cds_start": 36,
"cds_end": null,
"cds_length": 693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300953.2"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000533873.1",
"protein_id": "ENSP00000436252.1",
"transcript_support_level": 2,
"aa_start": 12,
"aa_end": null,
"aa_length": 230,
"cds_start": 36,
"cds_end": null,
"cds_length": 693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000533873.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000880918.1",
"protein_id": "ENSP00000550977.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 208,
"cds_start": 36,
"cds_end": null,
"cds_length": 627,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880918.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000923238.1",
"protein_id": "ENSP00000593297.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 198,
"cds_start": 36,
"cds_end": null,
"cds_length": 597,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923238.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "ENST00000923237.1",
"protein_id": "ENSP00000593296.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 174,
"cds_start": 36,
"cds_end": null,
"cds_length": 525,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923237.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "XM_011545151.3",
"protein_id": "XP_011543453.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 233,
"cds_start": 36,
"cds_end": null,
"cds_length": 702,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011545151.3"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "XM_017017987.2",
"protein_id": "XP_016873476.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 170,
"cds_start": 36,
"cds_end": null,
"cds_length": 513,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017017987.2"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.36C>T",
"hgvs_p": "p.Gly12Gly",
"transcript": "XM_047427235.1",
"protein_id": "XP_047283191.1",
"transcript_support_level": null,
"aa_start": 12,
"aa_end": null,
"aa_length": 165,
"cds_start": 36,
"cds_end": null,
"cds_length": 498,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047427235.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.-74C>T",
"hgvs_p": null,
"transcript": "ENST00000534206.5",
"protein_id": "ENSP00000435733.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 204,
"cds_start": null,
"cds_end": null,
"cds_length": 615,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000534206.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.-321C>T",
"hgvs_p": null,
"transcript": "NM_001300954.2",
"protein_id": "NP_001287883.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 172,
"cds_start": null,
"cds_end": null,
"cds_length": 519,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300954.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.-197C>T",
"hgvs_p": null,
"transcript": "NM_001300955.2",
"protein_id": "NP_001287884.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 172,
"cds_start": null,
"cds_end": null,
"cds_length": 519,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300955.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.-304C>T",
"hgvs_p": null,
"transcript": "ENST00000526597.5",
"protein_id": "ENSP00000431149.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 172,
"cds_start": null,
"cds_end": null,
"cds_length": 519,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000526597.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "c.-180C>T",
"hgvs_p": null,
"transcript": "ENST00000680583.1",
"protein_id": "ENSP00000505842.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 172,
"cds_start": null,
"cds_end": null,
"cds_length": 519,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680583.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACER3",
"gene_hgnc_id": 16066,
"hgvs_c": "n.36C>T",
"hgvs_p": null,
"transcript": "ENST00000525861.5",
"protein_id": "ENSP00000432379.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000525861.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
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"splice_prediction_selected": "Benign",
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{
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"BP7"
],
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}