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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-79347675-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=79347675&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 79347675,
"ref": "A",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000278550.12",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-320-50132T>A",
"hgvs_p": null,
"transcript": "NM_001098816.3",
"protein_id": "NP_001092286.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2769,
"cds_start": -4,
"cds_end": null,
"cds_length": 8310,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14381,
"mane_select": "ENST00000278550.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-320-50132T>A",
"hgvs_p": null,
"transcript": "ENST00000278550.12",
"protein_id": "ENSP00000278550.7",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2769,
"cds_start": -4,
"cds_end": null,
"cds_length": 8310,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14381,
"mane_select": "NM_001098816.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "n.240-50132T>A",
"hgvs_p": null,
"transcript": "ENST00000528688.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 474,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "n.441-50132T>A",
"hgvs_p": null,
"transcript": "ENST00000531583.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 748,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-148-50132T>A",
"hgvs_p": null,
"transcript": "XM_017017525.2",
"protein_id": "XP_016873014.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2794,
"cds_start": -4,
"cds_end": null,
"cds_length": 8385,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14284,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-148-50132T>A",
"hgvs_p": null,
"transcript": "XM_047426736.1",
"protein_id": "XP_047282692.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2785,
"cds_start": -4,
"cds_end": null,
"cds_length": 8358,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14257,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-148-50132T>A",
"hgvs_p": null,
"transcript": "XM_047426737.1",
"protein_id": "XP_047282693.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2778,
"cds_start": -4,
"cds_end": null,
"cds_length": 8337,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14236,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"hgvs_c": "c.-148-50132T>A",
"hgvs_p": null,
"transcript": "XM_047426739.1",
"protein_id": "XP_047282695.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2721,
"cds_start": -4,
"cds_end": null,
"cds_length": 8166,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 14065,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "TENM4",
"gene_hgnc_id": 29945,
"dbsnp": "rs1107992",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8700000047683716,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.87,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.467,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000278550.12",
"gene_symbol": "TENM4",
"hgnc_id": 29945,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.-320-50132T>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}