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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-82838439-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=82838439&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 82838439,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_199418.4",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1222A>G",
"hgvs_p": "p.Thr408Ala",
"transcript": "NM_005040.4",
"protein_id": "NP_005031.1",
"transcript_support_level": null,
"aa_start": 408,
"aa_end": null,
"aa_length": 496,
"cds_start": 1222,
"cds_end": null,
"cds_length": 1491,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000313010.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005040.4"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1222A>G",
"hgvs_p": "p.Thr408Ala",
"transcript": "ENST00000313010.8",
"protein_id": "ENSP00000317362.3",
"transcript_support_level": 1,
"aa_start": 408,
"aa_end": null,
"aa_length": 496,
"cds_start": 1222,
"cds_end": null,
"cds_length": 1491,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_005040.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000313010.8"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1285A>G",
"hgvs_p": "p.Thr429Ala",
"transcript": "NM_199418.4",
"protein_id": "NP_955450.2",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 517,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1554,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_199418.4"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1285A>G",
"hgvs_p": "p.Thr429Ala",
"transcript": "ENST00000393399.6",
"protein_id": "ENSP00000377055.2",
"transcript_support_level": 2,
"aa_start": 429,
"aa_end": null,
"aa_length": 517,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1554,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393399.6"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1117A>G",
"hgvs_p": "p.Thr373Ala",
"transcript": "ENST00000949391.1",
"protein_id": "ENSP00000619450.1",
"transcript_support_level": null,
"aa_start": 373,
"aa_end": null,
"aa_length": 461,
"cds_start": 1117,
"cds_end": null,
"cds_length": 1386,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949391.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.1060A>G",
"hgvs_p": "p.Thr354Ala",
"transcript": "ENST00000532809.2",
"protein_id": "ENSP00000437169.2",
"transcript_support_level": 3,
"aa_start": 354,
"aa_end": null,
"aa_length": 442,
"cds_start": 1060,
"cds_end": null,
"cds_length": 1329,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000532809.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.952A>G",
"hgvs_p": "p.Thr318Ala",
"transcript": "ENST00000913715.1",
"protein_id": "ENSP00000583774.1",
"transcript_support_level": null,
"aa_start": 318,
"aa_end": null,
"aa_length": 406,
"cds_start": 952,
"cds_end": null,
"cds_length": 1221,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000913715.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "NM_001319214.2",
"protein_id": "NP_001306143.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319214.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000531801.6",
"protein_id": "ENSP00000432004.2",
"transcript_support_level": 5,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000531801.6"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000534264.2",
"protein_id": "ENSP00000436095.2",
"transcript_support_level": 4,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000534264.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000679387.1",
"protein_id": "ENSP00000506058.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000679387.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000679623.1",
"protein_id": "ENSP00000506508.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000679623.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000680566.1",
"protein_id": "ENSP00000505064.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680566.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.907A>G",
"hgvs_p": "p.Thr303Ala",
"transcript": "ENST00000681637.1",
"protein_id": "ENSP00000506101.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 391,
"cds_start": 907,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000681637.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.610A>G",
"hgvs_p": "p.Thr204Ala",
"transcript": "ENST00000680437.1",
"protein_id": "ENSP00000505089.1",
"transcript_support_level": null,
"aa_start": 204,
"aa_end": null,
"aa_length": 292,
"cds_start": 610,
"cds_end": null,
"cds_length": 879,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680437.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000679809.1",
"protein_id": "ENSP00000506290.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000679809.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000680040.1",
"protein_id": "ENSP00000506579.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680040.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000680186.1",
"protein_id": "ENSP00000505188.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680186.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000680524.1",
"protein_id": "ENSP00000506464.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680524.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000681432.1",
"protein_id": "ENSP00000505091.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000681432.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000681592.1",
"protein_id": "ENSP00000505075.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000681592.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PRCP",
"gene_hgnc_id": 9344,
"hgvs_c": "c.118A>G",
"hgvs_p": "p.Thr40Ala",
"transcript": "ENST00000681883.1",
"protein_id": "ENSP00000506008.1",
"transcript_support_level": null,
"aa_start": 40,
"aa_end": null,
"aa_length": 128,
"cds_start": 118,
"cds_end": null,
"cds_length": 387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000681883.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
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}
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}