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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-93667736-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=93667736&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 93667736,
"ref": "C",
"alt": "T",
"effect": "stop_gained",
"transcript": "NM_033395.2",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "NM_033395.2",
"protein_id": "NP_203753.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2601,
"cds_start": 238,
"cds_end": null,
"cds_length": 7806,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8014,
"mane_select": "ENST00000325212.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "ENST00000325212.11",
"protein_id": "ENSP00000316681.6",
"transcript_support_level": 2,
"aa_start": 80,
"aa_end": null,
"aa_length": 2601,
"cds_start": 238,
"cds_end": null,
"cds_length": 7806,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8014,
"mane_select": "NM_033395.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_011543047.2",
"protein_id": "XP_011541349.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2645,
"cds_start": 238,
"cds_end": null,
"cds_length": 7938,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8138,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_017018470.2",
"protein_id": "XP_016873959.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2644,
"cds_start": 238,
"cds_end": null,
"cds_length": 7935,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8135,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_011543048.2",
"protein_id": "XP_011541350.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2632,
"cds_start": 238,
"cds_end": null,
"cds_length": 7899,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8099,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427788.1",
"protein_id": "XP_047283744.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2631,
"cds_start": 238,
"cds_end": null,
"cds_length": 7896,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8096,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_005274366.2",
"protein_id": "XP_005274423.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2615,
"cds_start": 238,
"cds_end": null,
"cds_length": 7848,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8056,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_005274367.3",
"protein_id": "XP_005274424.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2614,
"cds_start": 238,
"cds_end": null,
"cds_length": 7845,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 8053,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_011543049.2",
"protein_id": "XP_011541351.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2597,
"cds_start": 238,
"cds_end": null,
"cds_length": 7794,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7994,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_017018471.2",
"protein_id": "XP_016873960.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2596,
"cds_start": 238,
"cds_end": null,
"cds_length": 7791,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7991,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427789.1",
"protein_id": "XP_047283745.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2584,
"cds_start": 238,
"cds_end": null,
"cds_length": 7755,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7955,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427790.1",
"protein_id": "XP_047283746.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2583,
"cds_start": 238,
"cds_end": null,
"cds_length": 7752,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7952,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_017018472.2",
"protein_id": "XP_016873961.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2567,
"cds_start": 238,
"cds_end": null,
"cds_length": 7704,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7912,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_005274368.3",
"protein_id": "XP_005274425.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2566,
"cds_start": 238,
"cds_end": null,
"cds_length": 7701,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 7909,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427791.1",
"protein_id": "XP_047283747.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 2554,
"cds_start": 238,
"cds_end": null,
"cds_length": 7665,
"cdna_start": 357,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427792.1",
"protein_id": "XP_047283748.1",
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427796.1",
"protein_id": "XP_047283752.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 1987,
"cds_start": 238,
"cds_end": null,
"cds_length": 5964,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 6182,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*",
"transcript": "XM_047427797.1",
"protein_id": "XP_047283753.1",
"transcript_support_level": null,
"aa_start": 80,
"aa_end": null,
"aa_length": 1939,
"cds_start": 238,
"cds_end": null,
"cds_length": 5820,
"cdna_start": 357,
"cdna_end": null,
"cdna_length": 6038,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CEP295",
"gene_hgnc_id": 29366,
"dbsnp": "rs7128850",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.28999999165534973,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.29,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 1.773,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 10,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2",
"acmg_by_gene": [
{
"score": 10,
"benign_score": 0,
"pathogenic_score": 10,
"criteria": [
"PVS1",
"PM2"
],
"verdict": "Pathogenic",
"transcript": "NM_033395.2",
"gene_symbol": "CEP295",
"hgnc_id": 29366,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR",
"hgvs_c": "c.238C>T",
"hgvs_p": "p.Gln80*"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}