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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-10128656-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=10128656&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 10128656,
"ref": "C",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000304084.13",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "NM_197947.3",
"protein_id": "NP_922938.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 247,
"cds_start": -4,
"cds_end": null,
"cds_length": 744,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2542,
"mane_select": "ENST00000304084.13",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000304084.13",
"protein_id": "ENSP00000302569.8",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 247,
"cds_start": -4,
"cds_end": null,
"cds_length": 744,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2542,
"mane_select": "NM_197947.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000353231.9",
"protein_id": "ENSP00000266456.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 201,
"cds_start": -4,
"cds_end": null,
"cds_length": 606,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2446,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000533022.5",
"protein_id": "ENSP00000431461.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 189,
"cds_start": -4,
"cds_end": null,
"cds_length": 570,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 625,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.103+1324G>T",
"hgvs_p": null,
"transcript": "ENST00000396484.6",
"protein_id": "ENSP00000379743.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 168,
"cds_start": -4,
"cds_end": null,
"cds_length": 507,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1000,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000298523.9",
"protein_id": "ENSP00000298523.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 143,
"cds_start": -4,
"cds_end": null,
"cds_length": 432,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1154,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000310002.4",
"protein_id": "ENSP00000312089.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 77,
"cds_start": -4,
"cds_end": null,
"cds_length": 234,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 425,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "n.103+1324G>T",
"hgvs_p": null,
"transcript": "ENST00000349926.9",
"protein_id": "ENSP00000344723.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 355,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "n.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000465100.5",
"protein_id": "ENSP00000436923.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 881,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "n.205-811G>T",
"hgvs_p": null,
"transcript": "ENST00000528799.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 1006,
"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CLEC7A",
"gene_hgnc_id": 14558,
"hgvs_c": "n.104-811G>T",
"hgvs_p": null,
"transcript": "ENST00000529761.5",
"protein_id": "ENSP00000432876.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "CLEC7A",
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"transcript": "ENST00000534609.5",
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},
{
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"strand": false,
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],
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"exon_count": 5,
"intron_rank": 1,
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"gene_symbol": "CLEC7A",
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"hgvs_c": "c.104-811G>T",
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"transcript": "NM_022570.5",
"protein_id": "NP_072092.2",
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},
{
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],
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"exon_count": 5,
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"gene_symbol": "CLEC7A",
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"hgvs_c": "c.104-811G>T",
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"transcript": "NM_197948.3",
"protein_id": "NP_922939.1",
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},
{
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],
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"gene_symbol": "CLEC7A",
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"transcript": "NM_197950.3",
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},
{
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],
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"exon_count": 4,
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"gene_symbol": "CLEC7A",
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"hgvs_c": "c.104-811G>T",
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},
{
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],
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"gene_symbol": "CLEC7A",
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"transcript": "ENST00000525605.1",
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},
{
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],
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"exon_count": 3,
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"gene_symbol": "CLEC7A",
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"hgvs_c": "c.104-811G>T",
"hgvs_p": null,
"transcript": "NM_197954.3",
"protein_id": "NP_922945.1",
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},
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"consequences": [
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],
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"exon_count": 7,
"intron_rank": 1,
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"gene_symbol": "CLEC7A",
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"hgvs_c": "n.104-811G>T",
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"transcript": "ENST00000531192.5",
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},
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],
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},
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],
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},
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],
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"gene_symbol": "ENSG00000299754",
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"hgvs_c": "n.152-2425C>A",
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"transcript": "ENST00000766124.1",
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"biotype": null,
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},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000299754",
"gene_hgnc_id": null,
"hgvs_c": "n.35-981C>A",
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"transcript": "ENST00000766125.1",
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},
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}