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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-1027961-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=1027961&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 1027961,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_178040.4",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "NM_178040.4",
          "protein_id": "NP_829884.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000360905.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_178040.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000360905.9",
          "protein_id": "ENSP00000354158.3",
          "transcript_support_level": 1,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_178040.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000360905.9"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000589028.6",
          "protein_id": "ENSP00000468263.1",
          "transcript_support_level": 1,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000589028.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000543086.7",
          "protein_id": "ENSP00000438546.1",
          "transcript_support_level": 1,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1088,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3267,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000543086.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000355446.9",
          "protein_id": "ENSP00000347621.5",
          "transcript_support_level": 1,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1086,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3261,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000355446.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "n.58C>T",
          "hgvs_p": null,
          "transcript": "ENST00000347735.10",
          "protein_id": "ENSP00000340054.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000347735.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "n.58C>T",
          "hgvs_p": null,
          "transcript": "ENST00000440394.7",
          "protein_id": "ENSP00000410064.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000440394.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "n.58C>T",
          "hgvs_p": null,
          "transcript": "ENST00000545948.5",
          "protein_id": "ENSP00000442976.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000545948.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000546231.6",
          "protein_id": "ENSP00000442739.2",
          "transcript_support_level": 5,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1120,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3363,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000546231.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000950324.1",
          "protein_id": "ENSP00000620383.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1120,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3363,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000950324.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000950325.1",
          "protein_id": "ENSP00000620384.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1120,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3363,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000950325.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000950327.1",
          "protein_id": "ENSP00000620386.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1120,
          "cds_start": 58,
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          "cds_length": 3363,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000950327.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000397203.7",
          "protein_id": "ENSP00000380386.4",
          "transcript_support_level": 5,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397203.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895621.1",
          "protein_id": "ENSP00000565680.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895621.1"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895624.1",
          "protein_id": "ENSP00000565683.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895624.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895626.1",
          "protein_id": "ENSP00000565685.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": 58,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895626.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895631.1",
          "protein_id": "ENSP00000565690.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
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          "cds_start": 58,
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          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "NM_178039.4",
          "protein_id": "NP_829883.1",
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          "aa_end": null,
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          "cds_start": 58,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_178039.4"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895622.1",
          "protein_id": "ENSP00000565681.1",
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          "cds_start": 58,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895622.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
          "gene_hgnc_id": 17072,
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys",
          "transcript": "ENST00000895623.1",
          "protein_id": "ENSP00000565682.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
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          "cds_start": 58,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895623.1"
        },
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        {
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          "biotype": "pseudogene",
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        {
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          "gene_symbol": "ERC1",
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          "hgvs_c": "n.479C>T",
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          "transcript": "XR_001748631.3",
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          "biotype": "pseudogene",
          "feature": "XR_001748631.3"
        },
        {
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          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ERC1",
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          "hgvs_c": "n.259+36474C>T",
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          "transcript": "ENST00000690948.1",
          "protein_id": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000690948.1"
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      ],
      "gene_symbol": "ERC1",
      "gene_hgnc_id": 17072,
      "dbsnp": "rs377032908",
      "frequency_reference_population": 0.000006196432,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 10,
      "gnomad_exomes_af": 0.000004789,
      "gnomad_genomes_af": 0.0000197174,
      "gnomad_exomes_ac": 7,
      "gnomad_genomes_ac": 3,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.7681351900100708,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.597,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.691,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.36,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.871,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PP3,BS2",
      "acmg_by_gene": [
        {
          "score": -3,
          "benign_score": 4,
          "pathogenic_score": 1,
          "criteria": [
            "PP3",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_178040.4",
          "gene_symbol": "ERC1",
          "hgnc_id": 17072,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.58C>T",
          "hgvs_p": "p.Arg20Cys"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}