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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-103943308-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=103943308&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 103943308,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_003299.3",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "NM_003299.3",
          "protein_id": "NP_003290.1",
          "transcript_support_level": null,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 803,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2412,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000299767.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003299.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000299767.10",
          "protein_id": "ENSP00000299767.4",
          "transcript_support_level": 1,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 803,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2412,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_003299.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000299767.10"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000614327.2",
          "protein_id": "ENSP00000477660.2",
          "transcript_support_level": 1,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 751,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2256,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000614327.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000681861.1",
          "protein_id": "ENSP00000506419.1",
          "transcript_support_level": null,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 814,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2445,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000681861.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000681949.1",
          "protein_id": "ENSP00000504951.1",
          "transcript_support_level": null,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 813,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2442,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000681949.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000863861.1",
          "protein_id": "ENSP00000533920.1",
          "transcript_support_level": null,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 800,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2403,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863861.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1870C>T",
          "hgvs_p": "p.Leu624Phe",
          "transcript": "ENST00000925364.1",
          "protein_id": "ENSP00000595423.1",
          "transcript_support_level": null,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 800,
          "cds_start": 1870,
          "cds_end": null,
          "cds_length": 2403,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000925364.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000550595.2",
          "protein_id": "ENSP00000450215.2",
          "transcript_support_level": 2,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 796,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2391,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000550595.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe",
          "transcript": "ENST00000680762.1",
          "protein_id": "ENSP00000506150.1",
          "transcript_support_level": null,
          "aa_start": 627,
          "aa_end": null,
          "aa_length": 789,
          "cds_start": 1879,
          "cds_end": null,
          "cds_length": 2370,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000680762.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1813C>T",
          "hgvs_p": "p.Leu605Phe",
          "transcript": "ENST00000863864.1",
          "protein_id": "ENSP00000533923.1",
          "transcript_support_level": null,
          "aa_start": 605,
          "aa_end": null,
          "aa_length": 781,
          "cds_start": 1813,
          "cds_end": null,
          "cds_length": 2346,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863864.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1783C>T",
          "hgvs_p": "p.Leu595Phe",
          "transcript": "ENST00000863860.1",
          "protein_id": "ENSP00000533919.1",
          "transcript_support_level": null,
          "aa_start": 595,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 1783,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863860.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1762C>T",
          "hgvs_p": "p.Leu588Phe",
          "transcript": "ENST00000925363.1",
          "protein_id": "ENSP00000595422.1",
          "transcript_support_level": null,
          "aa_start": 588,
          "aa_end": null,
          "aa_length": 764,
          "cds_start": 1762,
          "cds_end": null,
          "cds_length": 2295,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000925363.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1762C>T",
          "hgvs_p": "p.Leu588Phe",
          "transcript": "ENST00000925365.1",
          "protein_id": "ENSP00000595424.1",
          "transcript_support_level": null,
          "aa_start": 588,
          "aa_end": null,
          "aa_length": 764,
          "cds_start": 1762,
          "cds_end": null,
          "cds_length": 2295,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000925365.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1759C>T",
          "hgvs_p": "p.Leu587Phe",
          "transcript": "ENST00000863862.1",
          "protein_id": "ENSP00000533921.1",
          "transcript_support_level": null,
          "aa_start": 587,
          "aa_end": null,
          "aa_length": 763,
          "cds_start": 1759,
          "cds_end": null,
          "cds_length": 2292,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863862.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1627C>T",
          "hgvs_p": "p.Leu543Phe",
          "transcript": "ENST00000679861.1",
          "protein_id": "ENSP00000505440.1",
          "transcript_support_level": null,
          "aa_start": 543,
          "aa_end": null,
          "aa_length": 719,
          "cds_start": 1627,
          "cds_end": null,
          "cds_length": 2160,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000679861.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1627C>T",
          "hgvs_p": "p.Leu543Phe",
          "transcript": "ENST00000680316.1",
          "protein_id": "ENSP00000505046.1",
          "transcript_support_level": null,
          "aa_start": 543,
          "aa_end": null,
          "aa_length": 719,
          "cds_start": 1627,
          "cds_end": null,
          "cds_length": 2160,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000680316.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.1092+3683C>T",
          "hgvs_p": null,
          "transcript": "ENST00000925366.1",
          "protein_id": "ENSP00000595425.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 373,
          "cds_start": null,
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          "cds_length": 1122,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000925366.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.153-3585C>T",
          "hgvs_p": null,
          "transcript": "ENST00000863863.1",
          "protein_id": "ENSP00000533922.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 116,
          "cds_start": null,
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          "cds_length": 351,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863863.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "c.79-4003C>T",
          "hgvs_p": null,
          "transcript": "ENST00000949724.1",
          "protein_id": "ENSP00000619783.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 75,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 228,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000949724.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HSP90B1",
          "gene_hgnc_id": 12028,
          "hgvs_c": "n.2234C>T",
          "hgvs_p": null,
          "transcript": "ENST00000548462.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
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        {
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          "hgvs_c": "n.*1695C>T",
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          "transcript": "ENST00000681941.1",
          "protein_id": "ENSP00000505039.1",
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          "biotype": "nonsense_mediated_decay",
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        },
        {
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          "protein_coding": false,
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          "consequences": [
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          ],
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          "exon_count": 3,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "UQCC6",
          "gene_hgnc_id": 34450,
          "hgvs_c": "n.399-1215G>A",
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          "transcript": "ENST00000651157.1",
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          "cdna_start": null,
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          "biotype": "pseudogene",
          "feature": "ENST00000651157.1"
        }
      ],
      "gene_symbol": "HSP90B1",
      "gene_hgnc_id": 12028,
      "dbsnp": "rs747385288",
      "frequency_reference_population": 6.8414147e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.84141e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.8845305442810059,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.541,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.8592,
      "alphamissense_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.03,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 3.896,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 4,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate",
      "acmg_by_gene": [
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_003299.3",
          "gene_symbol": "HSP90B1",
          "hgnc_id": 12028,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.1879C>T",
          "hgvs_p": "p.Leu627Phe"
        },
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000651157.1",
          "gene_symbol": "UQCC6",
          "hgnc_id": 34450,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.399-1215G>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}