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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-108523553-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=108523553&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "SART3",
          "hgnc_id": 16860,
          "hgvs_c": "c.2850C>G",
          "hgvs_p": "p.Asn950Lys",
          "inheritance_mode": "AD,AR",
          "pathogenic_score": 2,
          "score": 0,
          "transcript": "NM_001410983.1",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "FICD",
          "hgnc_id": 18416,
          "hgvs_c": "c.152-2036G>C",
          "hgvs_p": null,
          "inheritance_mode": "AR",
          "pathogenic_score": 2,
          "score": 0,
          "transcript": "ENST00000549641.1",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_score": 0,
      "allele_count_reference_population": 1,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.4773,
      "alt": "C",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.52,
      "chr": "12",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.21929427981376648,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 963,
          "aa_ref": "N",
          "aa_start": 932,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4154,
          "cdna_start": 2815,
          "cds_end": null,
          "cds_length": 2892,
          "cds_start": 2796,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "NM_014706.4",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2796C>G",
          "hgvs_p": "p.Asn932Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000546815.6",
          "protein_coding": true,
          "protein_id": "NP_055521.1",
          "strand": false,
          "transcript": "NM_014706.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 963,
          "aa_ref": "N",
          "aa_start": 932,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4154,
          "cdna_start": 2815,
          "cds_end": null,
          "cds_length": 2892,
          "cds_start": 2796,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000546815.6",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2796C>G",
          "hgvs_p": "p.Asn932Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_014706.4",
          "protein_coding": true,
          "protein_id": "ENSP00000449386.2",
          "strand": false,
          "transcript": "ENST00000546815.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 981,
          "aa_ref": "N",
          "aa_start": 950,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3704,
          "cdna_start": 2855,
          "cds_end": null,
          "cds_length": 2946,
          "cds_start": 2850,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000228284.8",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2850C>G",
          "hgvs_p": "p.Asn950Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000228284.4",
          "strand": false,
          "transcript": "ENST00000228284.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 927,
          "aa_ref": "N",
          "aa_start": 896,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2834,
          "cdna_start": 2693,
          "cds_end": null,
          "cds_length": 2784,
          "cds_start": 2688,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000431469.6",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2688C>G",
          "hgvs_p": "p.Asn896Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000414453.2",
          "strand": false,
          "transcript": "ENST00000431469.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3637,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000546728.5",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "n.*1690C>G",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000449743.1",
          "strand": false,
          "transcript": "ENST00000546728.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3637,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000546728.5",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "n.*1690C>G",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000449743.1",
          "strand": false,
          "transcript": "ENST00000546728.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 981,
          "aa_ref": "N",
          "aa_start": 950,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4208,
          "cdna_start": 2869,
          "cds_end": null,
          "cds_length": 2946,
          "cds_start": 2850,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "NM_001410983.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2850C>G",
          "hgvs_p": "p.Asn950Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001397912.1",
          "strand": false,
          "transcript": "NM_001410983.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 971,
          "aa_ref": "N",
          "aa_start": 940,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3809,
          "cdna_start": 2837,
          "cds_end": null,
          "cds_length": 2916,
          "cds_start": 2820,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 20,
          "exon_rank_end": null,
          "feature": "ENST00000901890.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2820C>G",
          "hgvs_p": "p.Asn940Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000571949.1",
          "strand": false,
          "transcript": "ENST00000901890.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 968,
          "aa_ref": "N",
          "aa_start": 937,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4167,
          "cdna_start": 2830,
          "cds_end": null,
          "cds_length": 2907,
          "cds_start": 2811,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000901889.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2811C>G",
          "hgvs_p": "p.Asn937Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000571948.1",
          "strand": false,
          "transcript": "ENST00000901889.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 962,
          "aa_ref": "N",
          "aa_start": 931,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3816,
          "cdna_start": 2814,
          "cds_end": null,
          "cds_length": 2889,
          "cds_start": 2793,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000929722.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2793C>G",
          "hgvs_p": "p.Asn931Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000599781.1",
          "strand": false,
          "transcript": "ENST00000929722.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 960,
          "aa_ref": "N",
          "aa_start": 929,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3676,
          "cdna_start": 2808,
          "cds_end": null,
          "cds_length": 2883,
          "cds_start": 2787,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000901891.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2787C>G",
          "hgvs_p": "p.Asn929Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000571950.1",
          "strand": false,
          "transcript": "ENST00000901891.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 950,
          "aa_ref": "N",
          "aa_start": 919,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3636,
          "cdna_start": 2768,
          "cds_end": null,
          "cds_length": 2853,
          "cds_start": 2757,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000901893.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2757C>G",
          "hgvs_p": "p.Asn919Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000571952.1",
          "strand": false,
          "transcript": "ENST00000901893.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 911,
          "aa_ref": "N",
          "aa_start": 880,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3999,
          "cdna_start": 2661,
          "cds_end": null,
          "cds_length": 2736,
          "cds_start": 2640,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000901888.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2640C>G",
          "hgvs_p": "p.Asn880Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000571947.1",
          "strand": false,
          "transcript": "ENST00000901888.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 904,
          "aa_ref": "N",
          "aa_start": 873,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3500,
          "cdna_start": 2638,
          "cds_end": null,
          "cds_length": 2715,
          "cds_start": 2619,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000963654.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2619C>G",
          "hgvs_p": "p.Asn873Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000633713.1",
          "strand": false,
          "transcript": "ENST00000963654.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 877,
          "aa_ref": "N",
          "aa_start": 846,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3425,
          "cdna_start": 2557,
          "cds_end": null,
          "cds_length": 2634,
          "cds_start": 2538,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000929723.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2538C>G",
          "hgvs_p": "p.Asn846Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000599782.1",
          "strand": false,
          "transcript": "ENST00000929723.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 875,
          "aa_ref": "N",
          "aa_start": 844,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3418,
          "cdna_start": 2550,
          "cds_end": null,
          "cds_length": 2628,
          "cds_start": 2532,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000929724.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2532C>G",
          "hgvs_p": "p.Asn844Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000599783.1",
          "strand": false,
          "transcript": "ENST00000929724.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 823,
          "aa_ref": "N",
          "aa_start": 792,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3253,
          "cdna_start": 2385,
          "cds_end": null,
          "cds_length": 2472,
          "cds_start": 2376,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000929726.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2376C>G",
          "hgvs_p": "p.Asn792Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000599785.1",
          "strand": false,
          "transcript": "ENST00000929726.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 787,
          "aa_ref": "N",
          "aa_start": 756,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3152,
          "cdna_start": 2284,
          "cds_end": null,
          "cds_length": 2364,
          "cds_start": 2268,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000929725.1",
          "gene_hgnc_id": 16860,
          "gene_symbol": "SART3",
          "hgvs_c": "c.2268C>G",
          "hgvs_p": "p.Asn756Lys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000599784.1",
          "strand": false,
          "transcript": "ENST00000929725.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K",
          "aa_end": null,
          "aa_length": 624,
          "aa_ref": "N",
          "aa_start": 593,
          "biotype": "protein_coding",
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}
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