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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-111650031-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=111650031&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 111650031,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_006768.5",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1323G>A",
"hgvs_p": "p.Met441Ile",
"transcript": "NM_006768.5",
"protein_id": "NP_006759.3",
"transcript_support_level": null,
"aa_start": 441,
"aa_end": null,
"aa_length": 592,
"cds_start": 1323,
"cds_end": null,
"cds_length": 1779,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000419234.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006768.5"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1323G>A",
"hgvs_p": "p.Met441Ile",
"transcript": "ENST00000419234.9",
"protein_id": "ENSP00000403524.3",
"transcript_support_level": 1,
"aa_start": 441,
"aa_end": null,
"aa_length": 592,
"cds_start": 1323,
"cds_end": null,
"cds_length": 1779,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_006768.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000419234.9"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1233G>A",
"hgvs_p": "p.Met411Ile",
"transcript": "ENST00000327551.6",
"protein_id": "ENSP00000330813.5",
"transcript_support_level": 1,
"aa_start": 411,
"aa_end": null,
"aa_length": 562,
"cds_start": 1233,
"cds_end": null,
"cds_length": 1689,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000327551.6"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1284G>A",
"hgvs_p": "p.Met428Ile",
"transcript": "ENST00000871570.1",
"protein_id": "ENSP00000541629.1",
"transcript_support_level": null,
"aa_start": 428,
"aa_end": null,
"aa_length": 579,
"cds_start": 1284,
"cds_end": null,
"cds_length": 1740,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871570.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1233G>A",
"hgvs_p": "p.Met411Ile",
"transcript": "ENST00000871569.1",
"protein_id": "ENSP00000541628.1",
"transcript_support_level": null,
"aa_start": 411,
"aa_end": null,
"aa_length": 562,
"cds_start": 1233,
"cds_end": null,
"cds_length": 1689,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871569.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1209G>A",
"hgvs_p": "p.Met403Ile",
"transcript": "ENST00000871567.1",
"protein_id": "ENSP00000541626.1",
"transcript_support_level": null,
"aa_start": 403,
"aa_end": null,
"aa_length": 554,
"cds_start": 1209,
"cds_end": null,
"cds_length": 1665,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871567.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1161G>A",
"hgvs_p": "p.Met387Ile",
"transcript": "ENST00000871566.1",
"protein_id": "ENSP00000541625.1",
"transcript_support_level": null,
"aa_start": 387,
"aa_end": null,
"aa_length": 538,
"cds_start": 1161,
"cds_end": null,
"cds_length": 1617,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871566.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1098G>A",
"hgvs_p": "p.Met366Ile",
"transcript": "ENST00000871571.1",
"protein_id": "ENSP00000541630.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 517,
"cds_start": 1098,
"cds_end": null,
"cds_length": 1554,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871571.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1074G>A",
"hgvs_p": "p.Met358Ile",
"transcript": "ENST00000871568.1",
"protein_id": "ENSP00000541627.1",
"transcript_support_level": null,
"aa_start": 358,
"aa_end": null,
"aa_length": 509,
"cds_start": 1074,
"cds_end": null,
"cds_length": 1530,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871568.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.912G>A",
"hgvs_p": "p.Met304Ile",
"transcript": "ENST00000930028.1",
"protein_id": "ENSP00000600087.1",
"transcript_support_level": null,
"aa_start": 304,
"aa_end": null,
"aa_length": 455,
"cds_start": 912,
"cds_end": null,
"cds_length": 1368,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930028.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.849G>A",
"hgvs_p": "p.Met283Ile",
"transcript": "ENST00000871565.1",
"protein_id": "ENSP00000541624.1",
"transcript_support_level": null,
"aa_start": 283,
"aa_end": null,
"aa_length": 434,
"cds_start": 849,
"cds_end": null,
"cds_length": 1305,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871565.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.645G>A",
"hgvs_p": "p.Met215Ile",
"transcript": "ENST00000930027.1",
"protein_id": "ENSP00000600086.1",
"transcript_support_level": null,
"aa_start": 215,
"aa_end": null,
"aa_length": 366,
"cds_start": 645,
"cds_end": null,
"cds_length": 1101,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930027.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1446G>A",
"hgvs_p": "p.Met482Ile",
"transcript": "XM_005253944.5",
"protein_id": "XP_005254001.1",
"transcript_support_level": null,
"aa_start": 482,
"aa_end": null,
"aa_length": 633,
"cds_start": 1446,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005253944.5"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.1161G>A",
"hgvs_p": "p.Met387Ile",
"transcript": "XM_017019992.2",
"protein_id": "XP_016875481.1",
"transcript_support_level": null,
"aa_start": 387,
"aa_end": null,
"aa_length": 538,
"cds_start": 1161,
"cds_end": null,
"cds_length": 1617,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017019992.2"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.876G>A",
"hgvs_p": "p.Met292Ile",
"transcript": "XM_047429622.1",
"protein_id": "XP_047285578.1",
"transcript_support_level": null,
"aa_start": 292,
"aa_end": null,
"aa_length": 443,
"cds_start": 876,
"cds_end": null,
"cds_length": 1332,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047429622.1"
},
{
"aa_ref": "M",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "c.462G>A",
"hgvs_p": "p.Met154Ile",
"transcript": "XM_047429623.1",
"protein_id": "XP_047285579.1",
"transcript_support_level": null,
"aa_start": 154,
"aa_end": null,
"aa_length": 305,
"cds_start": 462,
"cds_end": null,
"cds_length": 918,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047429623.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"hgvs_c": "n.1227G>A",
"hgvs_p": null,
"transcript": "ENST00000547043.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000547043.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATXN2-AS",
"gene_hgnc_id": 51838,
"hgvs_c": "n.682C>T",
"hgvs_p": null,
"transcript": "ENST00000726948.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000726948.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATXN2-AS",
"gene_hgnc_id": 51838,
"hgvs_c": "n.*217C>T",
"hgvs_p": null,
"transcript": "ENST00000726949.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000726949.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LOC124903020",
"gene_hgnc_id": null,
"hgvs_c": "n.*195C>T",
"hgvs_p": null,
"transcript": "XR_007063463.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_007063463.1"
}
],
"gene_symbol": "BRAP",
"gene_hgnc_id": 1099,
"dbsnp": "rs769558666",
"frequency_reference_population": 0.000009359288,
"hom_count_reference_population": 0,
"allele_count_reference_population": 15,
"gnomad_exomes_af": 0.00000965164,
"gnomad_genomes_af": 0.0000065722,
"gnomad_exomes_ac": 14,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5400457978248596,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.219,
"revel_prediction": "Benign",
"alphamissense_score": 0.9275,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.11,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.364,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_006768.5",
"gene_symbol": "BRAP",
"hgnc_id": 1099,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1323G>A",
"hgvs_p": "p.Met441Ile"
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000726948.1",
"gene_symbol": "ATXN2-AS",
"hgnc_id": 51838,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.682C>T",
"hgvs_p": null
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "XR_007063463.1",
"gene_symbol": "LOC124903020",
"hgnc_id": null,
"effects": [
"downstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.*195C>T",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}