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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-112405271-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=112405271&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 112405271,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_000970.6",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_000970.6",
          "protein_id": "NP_000961.2",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000202773.14",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000970.6"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000202773.14",
          "protein_id": "ENSP00000202773.9",
          "transcript_support_level": 1,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000970.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000202773.14"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000424576.6",
          "protein_id": "ENSP00000403172.2",
          "transcript_support_level": 1,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000424576.6"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.898G>C",
          "hgvs_p": "p.Val300Leu",
          "transcript": "ENST00000935343.1",
          "protein_id": "ENSP00000605402.1",
          "transcript_support_level": null,
          "aa_start": 300,
          "aa_end": null,
          "aa_length": 314,
          "cds_start": 898,
          "cds_end": null,
          "cds_length": 945,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935343.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.826G>C",
          "hgvs_p": "p.Val276Leu",
          "transcript": "ENST00000895617.1",
          "protein_id": "ENSP00000565676.1",
          "transcript_support_level": null,
          "aa_start": 276,
          "aa_end": null,
          "aa_length": 290,
          "cds_start": 826,
          "cds_end": null,
          "cds_length": 873,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895617.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.826G>C",
          "hgvs_p": "p.Val276Leu",
          "transcript": "ENST00000935344.1",
          "protein_id": "ENSP00000605403.1",
          "transcript_support_level": null,
          "aa_start": 276,
          "aa_end": null,
          "aa_length": 290,
          "cds_start": 826,
          "cds_end": null,
          "cds_length": 873,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935344.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001024662.3",
          "protein_id": "NP_001019833.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001024662.3"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001320137.2",
          "protein_id": "NP_001307066.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320137.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001320138.2",
          "protein_id": "NP_001307067.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320138.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001320139.2",
          "protein_id": "NP_001307068.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320139.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001320140.2",
          "protein_id": "NP_001307069.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320140.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "NM_001320141.2",
          "protein_id": "NP_001307070.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
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          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320141.2"
        },
        {
          "aa_ref": "V",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000895614.1",
          "protein_id": "ENSP00000565673.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895614.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000895618.1",
          "protein_id": "ENSP00000565677.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895618.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
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          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000895619.1",
          "protein_id": "ENSP00000565678.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
          "cds_end": null,
          "cds_length": 867,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895619.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000895620.1",
          "protein_id": "ENSP00000565679.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
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          "cds_length": 867,
          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000935347.1",
          "protein_id": "ENSP00000605406.1",
          "transcript_support_level": null,
          "aa_start": 274,
          "aa_end": null,
          "aa_length": 288,
          "cds_start": 820,
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          "biotype": "protein_coding",
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        {
          "aa_ref": "V",
          "aa_alt": "L",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.820G>C",
          "hgvs_p": "p.Val274Leu",
          "transcript": "ENST00000955984.1",
          "protein_id": "ENSP00000626043.1",
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          "aa_end": null,
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          "cds_start": 820,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000955984.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.811G>C",
          "hgvs_p": "p.Val271Leu",
          "transcript": "ENST00000935336.1",
          "protein_id": "ENSP00000605395.1",
          "transcript_support_level": null,
          "aa_start": 271,
          "aa_end": null,
          "aa_length": 285,
          "cds_start": 811,
          "cds_end": null,
          "cds_length": 858,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935336.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RPL6",
          "gene_hgnc_id": 10362,
          "hgvs_c": "c.811G>C",
          "hgvs_p": "p.Val271Leu",
          "transcript": "ENST00000935345.1",
          "protein_id": "ENSP00000605404.1",
          "transcript_support_level": null,
          "aa_start": 271,
          "aa_end": null,
          "aa_length": 285,
          "cds_start": 811,
          "cds_end": null,
          "cds_length": 858,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935345.1"
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