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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-133106512-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=133106512&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 133106512,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_003440.4",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "NM_003440.4",
"protein_id": "NP_003431.2",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000355557.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003440.4"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "ENST00000355557.7",
"protein_id": "ENSP00000347755.2",
"transcript_support_level": 1,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_003440.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000355557.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF891",
"gene_hgnc_id": 38709,
"hgvs_c": "c.*13772G>C",
"hgvs_p": null,
"transcript": "NM_001277291.2",
"protein_id": "NP_001264220.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 544,
"cds_start": null,
"cds_end": null,
"cds_length": 1635,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000537226.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001277291.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF891",
"gene_hgnc_id": 38709,
"hgvs_c": "c.*13772G>C",
"hgvs_p": null,
"transcript": "ENST00000537226.3",
"protein_id": "ENSP00000437590.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 544,
"cds_start": null,
"cds_end": null,
"cds_length": 1635,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001277291.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000537226.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "n.*1062C>G",
"hgvs_p": null,
"transcript": "ENST00000536790.5",
"protein_id": "ENSP00000441170.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000536790.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "n.*1062C>G",
"hgvs_p": null,
"transcript": "ENST00000536790.5",
"protein_id": "ENSP00000441170.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000536790.5"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "ENST00000880216.1",
"protein_id": "ENSP00000550275.1",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880216.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "ENST00000880217.1",
"protein_id": "ENSP00000550276.1",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880217.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "ENST00000880218.1",
"protein_id": "ENSP00000550277.1",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000880218.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.926C>G",
"hgvs_p": "p.Pro309Arg",
"transcript": "NM_001300776.2",
"protein_id": "NP_001287705.1",
"transcript_support_level": null,
"aa_start": 309,
"aa_end": null,
"aa_length": 354,
"cds_start": 926,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300776.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.926C>G",
"hgvs_p": "p.Pro309Arg",
"transcript": "NM_001300778.2",
"protein_id": "NP_001287707.1",
"transcript_support_level": null,
"aa_start": 309,
"aa_end": null,
"aa_length": 354,
"cds_start": 926,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300778.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.926C>G",
"hgvs_p": "p.Pro309Arg",
"transcript": "ENST00000544426.5",
"protein_id": "ENSP00000445411.1",
"transcript_support_level": 2,
"aa_start": 309,
"aa_end": null,
"aa_length": 354,
"cds_start": 926,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000544426.5"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.851C>G",
"hgvs_p": "p.Pro284Arg",
"transcript": "NM_001300777.2",
"protein_id": "NP_001287706.1",
"transcript_support_level": null,
"aa_start": 284,
"aa_end": null,
"aa_length": 329,
"cds_start": 851,
"cds_end": null,
"cds_length": 990,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001300777.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1238C>G",
"hgvs_p": "p.Pro413Arg",
"transcript": "XM_011534833.3",
"protein_id": "XP_011533135.1",
"transcript_support_level": null,
"aa_start": 413,
"aa_end": null,
"aa_length": 458,
"cds_start": 1238,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011534833.3"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1238C>G",
"hgvs_p": "p.Pro413Arg",
"transcript": "XM_011534834.4",
"protein_id": "XP_011533136.1",
"transcript_support_level": null,
"aa_start": 413,
"aa_end": null,
"aa_length": 458,
"cds_start": 1238,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011534834.4"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg",
"transcript": "XM_011534835.4",
"protein_id": "XP_011533137.1",
"transcript_support_level": null,
"aa_start": 412,
"aa_end": null,
"aa_length": 457,
"cds_start": 1235,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011534835.4"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1136C>G",
"hgvs_p": "p.Pro379Arg",
"transcript": "XM_011534837.3",
"protein_id": "XP_011533139.1",
"transcript_support_level": null,
"aa_start": 379,
"aa_end": null,
"aa_length": 424,
"cds_start": 1136,
"cds_end": null,
"cds_length": 1275,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011534837.3"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.1025C>G",
"hgvs_p": "p.Pro342Arg",
"transcript": "XM_047429512.1",
"protein_id": "XP_047285468.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 387,
"cds_start": 1025,
"cds_end": null,
"cds_length": 1164,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047429512.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"hgvs_c": "c.*814C>G",
"hgvs_p": null,
"transcript": "ENST00000440550.6",
"protein_id": "ENSP00000415016.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 101,
"cds_start": null,
"cds_end": null,
"cds_length": 306,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000440550.6"
}
],
"gene_symbol": "ZNF140",
"gene_hgnc_id": 12925,
"dbsnp": "rs777125253",
"frequency_reference_population": 0.000009294314,
"hom_count_reference_population": 0,
"allele_count_reference_population": 15,
"gnomad_exomes_af": 0.00000957736,
"gnomad_genomes_af": 0.00000657419,
"gnomad_exomes_ac": 14,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.685199499130249,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.291,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.8244,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.23,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 3.561,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_003440.4",
"gene_symbol": "ZNF140",
"hgnc_id": 12925,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1235C>G",
"hgvs_p": "p.Pro412Arg"
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001277291.2",
"gene_symbol": "ZNF891",
"hgnc_id": 38709,
"effects": [
"3_prime_UTR_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.*13772G>C",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}