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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-16364003-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=16364003&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 16364003,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001414355.1",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_020300.5",
          "protein_id": "NP_064696.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000396210.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_020300.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000396210.8",
          "protein_id": "ENSP00000379513.3",
          "transcript_support_level": 1,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_020300.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396210.8"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000396207.1",
          "protein_id": "ENSP00000379510.1",
          "transcript_support_level": 1,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396207.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.221+6304A>G",
          "hgvs_p": null,
          "transcript": "ENST00000535309.5",
          "protein_id": "ENSP00000438308.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 87,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 264,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000535309.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "n.153-3322A>G",
          "hgvs_p": null,
          "transcript": "ENST00000542256.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000542256.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.445A>G",
          "hgvs_p": "p.Met149Val",
          "transcript": "NM_001414355.1",
          "protein_id": "NP_001401284.1",
          "transcript_support_level": null,
          "aa_start": 149,
          "aa_end": null,
          "aa_length": 160,
          "cds_start": 445,
          "cds_end": null,
          "cds_length": 483,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414355.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.436A>G",
          "hgvs_p": "p.Met146Val",
          "transcript": "NM_001414356.1",
          "protein_id": "NP_001401285.1",
          "transcript_support_level": null,
          "aa_start": 146,
          "aa_end": null,
          "aa_length": 157,
          "cds_start": 436,
          "cds_end": null,
          "cds_length": 474,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414356.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_001260511.2",
          "protein_id": "NP_001247440.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001260511.2"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_001414357.1",
          "protein_id": "NP_001401286.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414357.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_001414358.1",
          "protein_id": "NP_001401287.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414358.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_001414359.1",
          "protein_id": "NP_001401288.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414359.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_145764.3",
          "protein_id": "NP_665707.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_145764.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_145791.3",
          "protein_id": "NP_665734.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_145791.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "NM_145792.3",
          "protein_id": "NP_665735.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_145792.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000010404.6",
          "protein_id": "ENSP00000010404.2",
          "transcript_support_level": 5,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000010404.6"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000396209.5",
          "protein_id": "ENSP00000379512.1",
          "transcript_support_level": 2,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396209.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000902096.1",
          "protein_id": "ENSP00000572155.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902096.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000902097.1",
          "protein_id": "ENSP00000572156.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902097.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000902098.1",
          "protein_id": "ENSP00000572157.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902098.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MGST1",
          "gene_hgnc_id": 7061,
          "hgvs_c": "c.430A>G",
          "hgvs_p": "p.Met144Val",
          "transcript": "ENST00000902099.1",
          "protein_id": "ENSP00000572158.1",
          "transcript_support_level": null,
          "aa_start": 144,
          "aa_end": null,
          "aa_length": 155,
          "cds_start": 430,
          "cds_end": null,
          "cds_length": 468,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000902099.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
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      "gnomad_exomes_af": 0.0000212128,
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      "gnomad_genomes_ac": 1,
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      "computational_score_selected": 0.8605265021324158,
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      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
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      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Uncertain_significance",
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      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.28,
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      "phylop100way_score": 8.02,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
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      "acmg_score": 4,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate",
      "acmg_by_gene": [
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            "PP3_Moderate"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001414355.1",
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          "effects": [
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          "hgvs_p": "p.Met149Val"
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}