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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-19191284-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=19191284&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 19191284,
      "ref": "G",
      "alt": "A",
      "effect": "intron_variant",
      "transcript": "NM_001256470.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001256470.2",
          "protein_id": "NP_001243399.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1282,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3849,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4797,
          "mane_select": "ENST00000429027.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "ENST00000429027.7",
          "protein_id": "ENSP00000404296.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1282,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3849,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4797,
          "mane_select": "NM_001256470.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "ENST00000538714.5",
          "protein_id": "ENSP00000439673.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1174,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3525,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6487,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "ENST00000299275.10",
          "protein_id": "ENSP00000299275.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1116,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3351,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4238,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.228-9041G>A",
          "hgvs_p": null,
          "transcript": "ENST00000540972.5",
          "protein_id": "ENSP00000439396.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 76,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 231,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1954,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001385923.1",
          "protein_id": "NP_001372852.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1276,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3831,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4779,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001385924.1",
          "protein_id": "NP_001372853.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1270,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3813,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4761,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001385925.1",
          "protein_id": "NP_001372854.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1264,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3795,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4743,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001385926.1",
          "protein_id": "NP_001372855.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": null,
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          "cdna_length": 4691,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
          "hgvs_p": null,
          "transcript": "NM_001385927.1",
          "protein_id": "NP_001372856.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1242,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 4677,
          "mane_select": null,
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        {
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          "canonical": false,
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          "intron_rank": 3,
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          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
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          "transcript": "NM_001385928.1",
          "protein_id": "NP_001372857.1",
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          "aa_start": null,
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          "aa_length": 1226,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
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          "strand": true,
          "consequences": [
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          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
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          "hgvs_c": "c.227+58834G>A",
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          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
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        {
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          "intron_rank": 3,
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          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
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          "transcript": "NM_001385931.1",
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        {
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          "gene_symbol": "PLEKHA5",
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          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
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          "transcript": "NM_001143821.3",
          "protein_id": "NP_001137293.2",
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          "intron_rank": 3,
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          "gene_symbol": "PLEKHA5",
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          "transcript": "NM_001385968.1",
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        {
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          "gene_symbol": "PLEKHA5",
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          "gene_symbol": "PLEKHA5",
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        {
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          "gene_symbol": "PLEKHA5",
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          "transcript": "NM_001385937.1",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
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          "consequences": [
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          "exon_count": 26,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PLEKHA5",
          "gene_hgnc_id": 30036,
          "hgvs_c": "c.227+58834G>A",
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          "transcript": "NM_019012.6",
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