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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-19191284-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=19191284&ref=G&alt=A&genome=hg38&allGenes=true"
API Response
json
{
"variants": [
{
"chr": "12",
"pos": 19191284,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_001256470.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001256470.2",
"protein_id": "NP_001243399.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1282,
"cds_start": -4,
"cds_end": null,
"cds_length": 3849,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4797,
"mane_select": "ENST00000429027.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "ENST00000429027.7",
"protein_id": "ENSP00000404296.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1282,
"cds_start": -4,
"cds_end": null,
"cds_length": 3849,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4797,
"mane_select": "NM_001256470.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "ENST00000538714.5",
"protein_id": "ENSP00000439673.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1174,
"cds_start": -4,
"cds_end": null,
"cds_length": 3525,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6487,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "ENST00000299275.10",
"protein_id": "ENSP00000299275.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1116,
"cds_start": -4,
"cds_end": null,
"cds_length": 3351,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4238,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.228-9041G>A",
"hgvs_p": null,
"transcript": "ENST00000540972.5",
"protein_id": "ENSP00000439396.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 76,
"cds_start": -4,
"cds_end": null,
"cds_length": 231,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1954,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385923.1",
"protein_id": "NP_001372852.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1276,
"cds_start": -4,
"cds_end": null,
"cds_length": 3831,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4779,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385924.1",
"protein_id": "NP_001372853.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1270,
"cds_start": -4,
"cds_end": null,
"cds_length": 3813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4761,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385925.1",
"protein_id": "NP_001372854.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1264,
"cds_start": -4,
"cds_end": null,
"cds_length": 3795,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4743,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385926.1",
"protein_id": "NP_001372855.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1262,
"cds_start": -4,
"cds_end": null,
"cds_length": 3789,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4691,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385927.1",
"protein_id": "NP_001372856.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1242,
"cds_start": -4,
"cds_end": null,
"cds_length": 3729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4677,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385928.1",
"protein_id": "NP_001372857.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1226,
"cds_start": -4,
"cds_end": null,
"cds_length": 3681,
"cdna_start": null,
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"cdna_length": 4629,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385929.1",
"protein_id": "NP_001372858.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1219,
"cds_start": -4,
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"cds_length": 3660,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385930.1",
"protein_id": "NP_001372859.1",
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"aa_start": null,
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"cdna_start": null,
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{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 3,
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"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385931.1",
"protein_id": "NP_001372860.1",
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"feature": null
},
{
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"strand": true,
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],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 3,
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"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
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"transcript": "NM_001385932.1",
"protein_id": "NP_001372861.1",
"transcript_support_level": null,
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"aa_length": 1179,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001143821.3",
"protein_id": "NP_001137293.2",
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},
{
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],
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"gene_symbol": "PLEKHA5",
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"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385968.1",
"protein_id": "NP_001372897.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385934.1",
"protein_id": "NP_001372863.1",
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},
{
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"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
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"transcript": "NM_001385936.1",
"protein_id": "NP_001372865.1",
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{
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],
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"intron_rank": 3,
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"gene_symbol": "PLEKHA5",
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"hgvs_c": "c.227+58834G>A",
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},
{
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],
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"gene_symbol": "PLEKHA5",
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"hgvs_c": "c.227+58834G>A",
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"transcript": "NM_019012.6",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385938.1",
"protein_id": "NP_001372867.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1111,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PLEKHA5",
"gene_hgnc_id": 30036,
"hgvs_c": "c.227+58834G>A",
"hgvs_p": null,
"transcript": "NM_001385943.1",
"protein_id": "NP_001372872.1",
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}