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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-2686202-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=2686202&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 2686202,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000347598.9",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5717G>A",
          "hgvs_p": "p.Arg1906Gln",
          "transcript": "NM_000719.7",
          "protein_id": "NP_000710.5",
          "transcript_support_level": null,
          "aa_start": 1906,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 5717,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": 6293,
          "cdna_end": null,
          "cdna_length": 13744,
          "mane_select": "ENST00000399655.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5717G>A",
          "hgvs_p": "p.Arg1906Gln",
          "transcript": "NM_001167623.2",
          "protein_id": "NP_001161095.1",
          "transcript_support_level": null,
          "aa_start": 1906,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 5717,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": 6293,
          "cdna_end": null,
          "cdna_length": 13744,
          "mane_select": null,
          "mane_plus": "ENST00000399603.6",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5717G>A",
          "hgvs_p": "p.Arg1906Gln",
          "transcript": "ENST00000399603.6",
          "protein_id": "ENSP00000382512.1",
          "transcript_support_level": 5,
          "aa_start": 1906,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 5717,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": 6293,
          "cdna_end": null,
          "cdna_length": 13744,
          "mane_select": null,
          "mane_plus": "NM_001167623.2",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5717G>A",
          "hgvs_p": "p.Arg1906Gln",
          "transcript": "ENST00000399655.6",
          "protein_id": "ENSP00000382563.1",
          "transcript_support_level": 1,
          "aa_start": 1906,
          "aa_end": null,
          "aa_length": 2138,
          "cds_start": 5717,
          "cds_end": null,
          "cds_length": 6417,
          "cdna_start": 6293,
          "cdna_end": null,
          "cdna_length": 13744,
          "mane_select": "NM_000719.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 48,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.6056G>A",
          "hgvs_p": "p.Arg2019Gln",
          "transcript": "ENST00000682544.1",
          "protein_id": "ENSP00000507184.1",
          "transcript_support_level": null,
          "aa_start": 2019,
          "aa_end": null,
          "aa_length": 2251,
          "cds_start": 6056,
          "cds_end": null,
          "cds_length": 6756,
          "cdna_start": 6347,
          "cdna_end": null,
          "cdna_length": 7047,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5930G>A",
          "hgvs_p": "p.Arg1977Gln",
          "transcript": "ENST00000406454.8",
          "protein_id": "ENSP00000385896.3",
          "transcript_support_level": 5,
          "aa_start": 1977,
          "aa_end": null,
          "aa_length": 2209,
          "cds_start": 5930,
          "cds_end": null,
          "cds_length": 6630,
          "cdna_start": 6506,
          "cdna_end": null,
          "cdna_length": 8166,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5897G>A",
          "hgvs_p": "p.Arg1966Gln",
          "transcript": "ENST00000399634.6",
          "protein_id": "ENSP00000382542.2",
          "transcript_support_level": 5,
          "aa_start": 1966,
          "aa_end": null,
          "aa_length": 2198,
          "cds_start": 5897,
          "cds_end": null,
          "cds_length": 6597,
          "cdna_start": 6473,
          "cdna_end": null,
          "cdna_length": 8133,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5882G>A",
          "hgvs_p": "p.Arg1961Gln",
          "transcript": "ENST00000683824.1",
          "protein_id": "ENSP00000507867.1",
          "transcript_support_level": null,
          "aa_start": 1961,
          "aa_end": null,
          "aa_length": 2193,
          "cds_start": 5882,
          "cds_end": null,
          "cds_length": 6582,
          "cdna_start": 5882,
          "cdna_end": null,
          "cdna_length": 6582,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 47,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5861G>A",
          "hgvs_p": "p.Arg1954Gln",
          "transcript": "ENST00000347598.9",
          "protein_id": "ENSP00000266376.6",
          "transcript_support_level": 1,
          "aa_start": 1954,
          "aa_end": null,
          "aa_length": 2186,
          "cds_start": 5861,
          "cds_end": null,
          "cds_length": 6561,
          "cdna_start": 6437,
          "cdna_end": null,
          "cdna_length": 13888,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5840G>A",
          "hgvs_p": "p.Arg1947Gln",
          "transcript": "ENST00000344100.7",
          "protein_id": "ENSP00000341092.3",
          "transcript_support_level": 1,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2179,
          "cds_start": 5840,
          "cds_end": null,
          "cds_length": 6540,
          "cdna_start": 5840,
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          "cdna_length": 6634,
          "mane_select": null,
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          "biotype": null,
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        },
        {
          "aa_ref": "R",
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          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
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          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5822G>A",
          "hgvs_p": "p.Arg1941Gln",
          "transcript": "ENST00000327702.12",
          "protein_id": "ENSP00000329877.7",
          "transcript_support_level": 1,
          "aa_start": 1941,
          "aa_end": null,
          "aa_length": 2173,
          "cds_start": 5822,
          "cds_end": null,
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          "cdna_start": 6398,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
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          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5822G>A",
          "hgvs_p": "p.Arg1941Gln",
          "transcript": "ENST00000399617.6",
          "protein_id": "ENSP00000382526.1",
          "transcript_support_level": 5,
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          "cds_start": 5822,
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          "cdna_start": 6059,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "R",
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          "strand": true,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5807G>A",
          "hgvs_p": "p.Arg1936Gln",
          "transcript": "ENST00000682462.1",
          "protein_id": "ENSP00000507105.1",
          "transcript_support_level": null,
          "aa_start": 1936,
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          "cds_start": 5807,
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        },
        {
          "aa_ref": "R",
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          "canonical": true,
          "protein_coding": true,
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          "consequences": [
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          ],
          "exon_rank": 45,
          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5807G>A",
          "hgvs_p": "p.Arg1936Gln",
          "transcript": "ENST00000683781.1",
          "protein_id": "ENSP00000507434.1",
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        },
        {
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          "hgvs_c": "c.5807G>A",
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        },
        {
          "aa_ref": "R",
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          "canonical": true,
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 45,
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          "intron_rank": null,
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          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5807G>A",
          "hgvs_p": "p.Arg1936Gln",
          "transcript": "ENST00000683956.1",
          "protein_id": "ENSP00000506882.1",
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        {
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          "consequences": [
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          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5801G>A",
          "hgvs_p": "p.Arg1934Gln",
          "transcript": "ENST00000399638.5",
          "protein_id": "ENSP00000382547.1",
          "transcript_support_level": 1,
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        {
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          "gene_symbol": "CACNA1C",
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          "transcript": "ENST00000335762.10",
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        },
        {
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          "hgvs_c": "c.5777G>A",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 45,
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          "exon_count": 47,
          "intron_rank": null,
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          "gene_symbol": "CACNA1C",
          "gene_hgnc_id": 1390,
          "hgvs_c": "c.5774G>A",
          "hgvs_p": "p.Arg1925Gln",
          "transcript": "ENST00000399621.5",
          "protein_id": "ENSP00000382530.1",
          "transcript_support_level": 1,
          "aa_start": 1925,
          "aa_end": null,
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          "cds_start": 5774,
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          "cds_length": 6474,
          "cdna_start": 5774,
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          "cdna_length": 6568,
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          "feature": null
        },
        {
          "aa_ref": "R",
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          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
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      "computational_prediction_selected": "Benign",
      "computational_source_selected": "CardioboostArm",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.319,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.06,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 6.416,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -7,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Moderate,BP6,BS2",
      "acmg_by_gene": [
        {
          "score": -7,
          "benign_score": 7,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Moderate",
            "BP6",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000347598.9",
          "gene_symbol": "CACNA1C",
          "hgnc_id": 1390,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.5861G>A",
          "hgvs_p": "p.Arg1954Gln"
        },
        {
          "score": -3,
          "benign_score": 3,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Moderate",
            "BP6"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000501371.5",
          "gene_symbol": "ITFG2-AS1",
          "hgnc_id": 53128,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.294+3938C>T",
          "hgvs_p": null
        },
        {
          "score": -3,
          "benign_score": 3,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Moderate",
            "BP6"
          ],
          "verdict": "Likely_benign",
          "transcript": "NR_045725.1",
          "gene_symbol": "CACNA1C-AS1",
          "hgnc_id": 40119,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.333+3938C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Brugada syndrome 3,Cardiovascular phenotype,Long QT syndrome,Long qt syndrome 8,Primary dilated cardiomyopathy,Timothy syndrome,not provided,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:4 LB:2",
      "phenotype_combined": "Long QT syndrome|not specified|Primary dilated cardiomyopathy|not provided|Cardiovascular phenotype|Timothy syndrome;Long qt syndrome 8;Brugada syndrome 3",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}