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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-31073901-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=31073901&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 31073901,
"ref": "T",
"alt": "C",
"effect": "5_prime_UTR_variant",
"transcript": "NM_152438.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "NM_030653.4",
"protein_id": "NP_085911.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 906,
"cds_start": null,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3920,
"mane_select": "ENST00000542838.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_030653.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000542838.6",
"protein_id": "ENSP00000443426.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 906,
"cds_start": null,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3920,
"mane_select": "NM_030653.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000542838.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-73T>C",
"hgvs_p": null,
"transcript": "ENST00000545668.5",
"protein_id": "ENSP00000440402.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 970,
"cds_start": null,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3751,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000545668.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-78T>C",
"hgvs_p": null,
"transcript": "ENST00000228264.10",
"protein_id": "ENSP00000228264.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 880,
"cds_start": null,
"cds_end": null,
"cds_length": 2643,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3717,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000228264.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000350437.8",
"protein_id": "ENSP00000309965.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 856,
"cds_start": null,
"cds_end": null,
"cds_length": 2571,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3724,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000350437.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-73T>C",
"hgvs_p": null,
"transcript": "NM_001257144.2",
"protein_id": "NP_001244073.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 970,
"cds_start": null,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3793,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001257144.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "NM_152438.2",
"protein_id": "NP_689651.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 970,
"cds_start": null,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3915,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_152438.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-200T>C",
"hgvs_p": null,
"transcript": "NM_001413699.1",
"protein_id": "NP_001400628.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 944,
"cds_start": null,
"cds_end": null,
"cds_length": 2835,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3842,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001413699.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000950083.1",
"protein_id": "ENSP00000620142.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 931,
"cds_start": null,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4018,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950083.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-73T>C",
"hgvs_p": null,
"transcript": "ENST00000950085.1",
"protein_id": "ENSP00000620144.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 931,
"cds_start": null,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3862,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950085.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000879107.1",
"protein_id": "ENSP00000549166.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 918,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000879107.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
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"exon_count": 27,
"intron_rank": null,
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"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-73T>C",
"hgvs_p": null,
"transcript": "NM_001413692.1",
"protein_id": "NP_001400621.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001413692.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
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"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-306T>C",
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"transcript": "NM_001413693.1",
"protein_id": "NP_001400622.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001413693.1"
},
{
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"strand": true,
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],
"exon_rank": 1,
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"intron_rank": null,
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"gene_symbol": "DDX11",
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"hgvs_c": "c.-73T>C",
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"transcript": "ENST00000879106.1",
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"feature": "ENST00000879106.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-452T>C",
"hgvs_p": null,
"transcript": "ENST00000919948.1",
"protein_id": "ENSP00000590007.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 906,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000919948.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
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"gene_symbol": "DDX11",
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"hgvs_c": "c.-4493T>C",
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"transcript": "ENST00000919950.1",
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"biotype": "protein_coding",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-306T>C",
"hgvs_p": null,
"transcript": "ENST00000919952.1",
"protein_id": "ENSP00000590011.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000919952.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-539T>C",
"hgvs_p": null,
"transcript": "ENST00000919957.1",
"protein_id": "ENSP00000590016.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
"exon_rank": 1,
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"intron_rank": null,
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"gene_symbol": "DDX11",
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"hgvs_c": "c.-195T>C",
"hgvs_p": null,
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"protein_id": "ENSP00000590013.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
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"intron_rank": null,
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"gene_symbol": "DDX11",
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"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000950084.1",
"protein_id": "ENSP00000620143.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-195T>C",
"hgvs_p": null,
"transcript": "ENST00000919953.1",
"protein_id": "ENSP00000590012.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": 3925,
"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000919953.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DDX11",
"gene_hgnc_id": 2736,
"hgvs_c": "c.-306T>C",
"hgvs_p": null,
"transcript": "ENST00000919959.1",
"protein_id": "ENSP00000590018.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 900,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 4007,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919959.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
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}
],
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}