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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-47787746-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=47787746&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 47787746,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001368046.1",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2419C>G",
"hgvs_p": "p.Pro807Ala",
"transcript": "NM_015401.5",
"protein_id": "NP_056216.2",
"transcript_support_level": null,
"aa_start": 807,
"aa_end": null,
"aa_length": 991,
"cds_start": 2419,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000080059.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015401.5"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2419C>G",
"hgvs_p": "p.Pro807Ala",
"transcript": "ENST00000080059.12",
"protein_id": "ENSP00000080059.7",
"transcript_support_level": 1,
"aa_start": 807,
"aa_end": null,
"aa_length": 991,
"cds_start": 2419,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_015401.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000080059.12"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2470C>G",
"hgvs_p": "p.Pro824Ala",
"transcript": "ENST00000380610.8",
"protein_id": "ENSP00000369984.4",
"transcript_support_level": 2,
"aa_start": 824,
"aa_end": null,
"aa_length": 1014,
"cds_start": 2470,
"cds_end": null,
"cds_length": 3045,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380610.8"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2308C>G",
"hgvs_p": "p.Pro770Ala",
"transcript": "ENST00000354334.7",
"protein_id": "ENSP00000351326.3",
"transcript_support_level": 1,
"aa_start": 770,
"aa_end": null,
"aa_length": 954,
"cds_start": 2308,
"cds_end": null,
"cds_length": 2865,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000354334.7"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2419C>G",
"hgvs_p": "p.Pro807Ala",
"transcript": "ENST00000903438.1",
"protein_id": "ENSP00000573497.1",
"transcript_support_level": null,
"aa_start": 807,
"aa_end": null,
"aa_length": 1019,
"cds_start": 2419,
"cds_end": null,
"cds_length": 3060,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903438.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2419C>G",
"hgvs_p": "p.Pro807Ala",
"transcript": "ENST00000903432.1",
"protein_id": "ENSP00000573491.1",
"transcript_support_level": null,
"aa_start": 807,
"aa_end": null,
"aa_length": 1011,
"cds_start": 2419,
"cds_end": null,
"cds_length": 3036,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903432.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2461C>G",
"hgvs_p": "p.Pro821Ala",
"transcript": "NM_001368046.1",
"protein_id": "NP_001354975.1",
"transcript_support_level": null,
"aa_start": 821,
"aa_end": null,
"aa_length": 1005,
"cds_start": 2461,
"cds_end": null,
"cds_length": 3018,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001368046.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2368C>G",
"hgvs_p": "p.Pro790Ala",
"transcript": "NM_001308090.2",
"protein_id": "NP_001295019.1",
"transcript_support_level": null,
"aa_start": 790,
"aa_end": null,
"aa_length": 974,
"cds_start": 2368,
"cds_end": null,
"cds_length": 2925,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001308090.2"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2368C>G",
"hgvs_p": "p.Pro790Ala",
"transcript": "ENST00000552960.5",
"protein_id": "ENSP00000448532.1",
"transcript_support_level": 2,
"aa_start": 790,
"aa_end": null,
"aa_length": 974,
"cds_start": 2368,
"cds_end": null,
"cds_length": 2925,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000552960.5"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2347C>G",
"hgvs_p": "p.Pro783Ala",
"transcript": "ENST00000903431.1",
"protein_id": "ENSP00000573490.1",
"transcript_support_level": null,
"aa_start": 783,
"aa_end": null,
"aa_length": 967,
"cds_start": 2347,
"cds_end": null,
"cds_length": 2904,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903431.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2347C>G",
"hgvs_p": "p.Pro783Ala",
"transcript": "ENST00000903435.1",
"protein_id": "ENSP00000573494.1",
"transcript_support_level": null,
"aa_start": 783,
"aa_end": null,
"aa_length": 967,
"cds_start": 2347,
"cds_end": null,
"cds_length": 2904,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903435.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2335C>G",
"hgvs_p": "p.Pro779Ala",
"transcript": "ENST00000903434.1",
"protein_id": "ENSP00000573493.1",
"transcript_support_level": null,
"aa_start": 779,
"aa_end": null,
"aa_length": 963,
"cds_start": 2335,
"cds_end": null,
"cds_length": 2892,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903434.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2308C>G",
"hgvs_p": "p.Pro770Ala",
"transcript": "NM_001098416.4",
"protein_id": "NP_001091886.1",
"transcript_support_level": null,
"aa_start": 770,
"aa_end": null,
"aa_length": 954,
"cds_start": 2308,
"cds_end": null,
"cds_length": 2865,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001098416.4"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2302C>G",
"hgvs_p": "p.Pro768Ala",
"transcript": "ENST00000427332.6",
"protein_id": "ENSP00000404394.2",
"transcript_support_level": 5,
"aa_start": 768,
"aa_end": null,
"aa_length": 952,
"cds_start": 2302,
"cds_end": null,
"cds_length": 2859,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000427332.6"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Pro767Ala",
"transcript": "ENST00000903437.1",
"protein_id": "ENSP00000573496.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 951,
"cds_start": 2299,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903437.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2089C>G",
"hgvs_p": "p.Pro697Ala",
"transcript": "ENST00000903436.1",
"protein_id": "ENSP00000573495.1",
"transcript_support_level": null,
"aa_start": 697,
"aa_end": null,
"aa_length": 881,
"cds_start": 2089,
"cds_end": null,
"cds_length": 2646,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903436.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.1978C>G",
"hgvs_p": "p.Pro660Ala",
"transcript": "ENST00000903433.1",
"protein_id": "ENSP00000573492.1",
"transcript_support_level": null,
"aa_start": 660,
"aa_end": null,
"aa_length": 844,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2535,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903433.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.595C>G",
"hgvs_p": "p.Pro199Ala",
"transcript": "ENST00000548080.5",
"protein_id": "ENSP00000446538.1",
"transcript_support_level": 5,
"aa_start": 199,
"aa_end": null,
"aa_length": 383,
"cds_start": 595,
"cds_end": null,
"cds_length": 1152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000548080.5"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2551C>G",
"hgvs_p": "p.Pro851Ala",
"transcript": "XM_011538481.2",
"protein_id": "XP_011536783.2",
"transcript_support_level": null,
"aa_start": 851,
"aa_end": null,
"aa_length": 1035,
"cds_start": 2551,
"cds_end": null,
"cds_length": 3108,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011538481.2"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2551C>G",
"hgvs_p": "p.Pro851Ala",
"transcript": "XM_047428978.1",
"protein_id": "XP_047284934.1",
"transcript_support_level": null,
"aa_start": 851,
"aa_end": null,
"aa_length": 1035,
"cds_start": 2551,
"cds_end": null,
"cds_length": 3108,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047428978.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2440C>G",
"hgvs_p": "p.Pro814Ala",
"transcript": "XM_011538480.1",
"protein_id": "XP_011536782.1",
"transcript_support_level": null,
"aa_start": 814,
"aa_end": null,
"aa_length": 998,
"cds_start": 2440,
"cds_end": null,
"cds_length": 2997,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011538480.1"
},
{
"aa_ref": "P",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HDAC7",
"gene_hgnc_id": 14067,
"hgvs_c": "c.2440C>G",
"hgvs_p": "p.Pro814Ala",
"transcript": "XM_024449018.2",
"protein_id": "XP_024304786.1",
"transcript_support_level": null,
"aa_start": 814,
"aa_end": null,
"aa_length": 998,
"cds_start": 2440,
"cds_end": null,
"cds_length": 2997,
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"revel_prediction": "Uncertain_significance",
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"bayesdelnoaf_score": -0.18,
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{
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"verdict": "Likely_benign",
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}