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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 12-53665364-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=53665364&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "12",
"pos": 53665364,
"ref": "T",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000394349.9",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "NM_005176.7",
"protein_id": "NP_005167.3",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 438,
"cdna_end": null,
"cdna_length": 632,
"mane_select": "ENST00000394349.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "ENST00000394349.9",
"protein_id": "ENSP00000377878.5",
"transcript_support_level": 2,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 438,
"cdna_end": null,
"cdna_length": 632,
"mane_select": "NM_005176.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "ENST00000552242.5",
"protein_id": "ENSP00000448801.2",
"transcript_support_level": 1,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 1757,
"cdna_end": null,
"cdna_length": 1950,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "n.1783A>C",
"hgvs_p": null,
"transcript": "ENST00000495596.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1976,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.424A>C",
"hgvs_p": "p.Met142Leu",
"transcript": "NM_001002031.4",
"protein_id": "NP_001002031.1",
"transcript_support_level": null,
"aa_start": 142,
"aa_end": null,
"aa_length": 157,
"cds_start": 424,
"cds_end": null,
"cds_length": 474,
"cdna_start": 562,
"cdna_end": null,
"cdna_length": 756,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.424A>C",
"hgvs_p": "p.Met142Leu",
"transcript": "ENST00000673498.1",
"protein_id": "ENSP00000499883.1",
"transcript_support_level": null,
"aa_start": 142,
"aa_end": null,
"aa_length": 157,
"cds_start": 424,
"cds_end": null,
"cds_length": 474,
"cdna_start": 960,
"cdna_end": null,
"cdna_length": 1163,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.382A>C",
"hgvs_p": "p.Met128Leu",
"transcript": "NM_001369757.1",
"protein_id": "NP_001356686.1",
"transcript_support_level": null,
"aa_start": 128,
"aa_end": null,
"aa_length": 143,
"cds_start": 382,
"cds_end": null,
"cds_length": 432,
"cdna_start": 556,
"cdna_end": null,
"cdna_length": 750,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "NM_001330269.2",
"protein_id": "NP_001317198.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 1913,
"cdna_end": null,
"cdna_length": 2107,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "NM_001369753.1",
"protein_id": "NP_001356682.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 536,
"cdna_end": null,
"cdna_length": 730,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "NM_001369754.1",
"protein_id": "NP_001356683.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 679,
"cdna_end": null,
"cdna_length": 873,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "NM_001369755.1",
"protein_id": "NP_001356684.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 496,
"cdna_end": null,
"cdna_length": 690,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "ENST00000338662.6",
"protein_id": "ENSP00000340315.6",
"transcript_support_level": 2,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 1630,
"cdna_end": null,
"cdna_length": 1792,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "ENST00000549164.5",
"protein_id": "ENSP00000447317.1",
"transcript_support_level": 3,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 564,
"cdna_end": null,
"cdna_length": 745,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.370A>C",
"hgvs_p": "p.Met124Leu",
"transcript": "NM_001369758.1",
"protein_id": "NP_001356687.1",
"transcript_support_level": null,
"aa_start": 124,
"aa_end": null,
"aa_length": 139,
"cds_start": 370,
"cds_end": null,
"cds_length": 420,
"cdna_start": 432,
"cdna_end": null,
"cdna_length": 626,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.262A>C",
"hgvs_p": "p.Met88Leu",
"transcript": "NM_001369756.1",
"protein_id": "NP_001356685.1",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 103,
"cds_start": 262,
"cds_end": null,
"cds_length": 312,
"cdna_start": 440,
"cdna_end": null,
"cdna_length": 634,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu",
"transcript": "XM_047428989.1",
"protein_id": "XP_047284945.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 141,
"cds_start": 376,
"cds_end": null,
"cds_length": 426,
"cdna_start": 430,
"cdna_end": null,
"cdna_length": 624,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"initiator_codon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "c.1A>C",
"hgvs_p": "p.Met1?",
"transcript": "ENST00000549748.2",
"protein_id": "ENSP00000447643.2",
"transcript_support_level": 2,
"aa_start": 1,
"aa_end": null,
"aa_length": 16,
"cds_start": 1,
"cds_end": null,
"cds_length": 51,
"cdna_start": 603,
"cdna_end": null,
"cdna_length": 728,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "n.604A>C",
"hgvs_p": null,
"transcript": "NR_163135.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 798,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "n.436A>C",
"hgvs_p": null,
"transcript": "NR_163136.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 630,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "n.442A>C",
"hgvs_p": null,
"transcript": "NR_163137.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 636,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"hgvs_c": "n.65+3784A>C",
"hgvs_p": null,
"transcript": "ENST00000550241.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 406,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "ATP5MC2",
"gene_hgnc_id": 842,
"dbsnp": null,
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5860085487365723,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.358,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.7421,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.09,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 8.017,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000394349.9",
"gene_symbol": "ATP5MC2",
"hgnc_id": 842,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.376A>C",
"hgvs_p": "p.Met126Leu"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}