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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-56586904-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=56586904&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 56586904,
      "ref": "A",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001414460.1",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "NM_002898.4",
          "protein_id": "NP_002889.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 8488,
          "mane_select": "ENST00000262031.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002898.4"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "ENST00000262031.10",
          "protein_id": "ENSP00000262031.5",
          "transcript_support_level": 1,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 8488,
          "mane_select": "NM_002898.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000262031.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "n.*535A>C",
          "hgvs_p": null,
          "transcript": "ENST00000552916.5",
          "protein_id": "ENSP00000450127.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1633,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000552916.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "n.*535A>C",
          "hgvs_p": null,
          "transcript": "ENST00000552916.5",
          "protein_id": "ENSP00000450127.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1633,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000552916.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "NM_001414460.1",
          "protein_id": "NP_001401389.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 429,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1290,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 8263,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414460.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "NM_001414461.1",
          "protein_id": "NP_001401390.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 8350,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414461.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "ENST00000855893.1",
          "protein_id": "ENSP00000525952.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 3952,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000855893.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "ENST00000855894.1",
          "protein_id": "ENSP00000525953.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 987,
          "cdna_end": null,
          "cdna_length": 4076,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000855894.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "ENST00000855895.1",
          "protein_id": "ENSP00000525954.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 3848,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000855895.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "ENST00000855897.1",
          "protein_id": "ENSP00000525956.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 929,
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          "cdna_start": 1061,
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          "cdna_length": 1600,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000855897.1"
        },
        {
          "aa_ref": "H",
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          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "NM_001414459.1",
          "protein_id": "NP_001401388.1",
          "transcript_support_level": null,
          "aa_start": 310,
          "aa_end": null,
          "aa_length": 388,
          "cds_start": 929,
          "cds_end": null,
          "cds_length": 1167,
          "cdna_start": 1133,
          "cdna_end": null,
          "cdna_length": 8401,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001414459.1"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.554A>C",
          "hgvs_p": "p.His185Pro",
          "transcript": "ENST00000550726.5",
          "protein_id": "ENSP00000449678.1",
          "transcript_support_level": 2,
          "aa_start": 185,
          "aa_end": null,
          "aa_length": 282,
          "cds_start": 554,
          "cds_end": null,
          "cds_length": 849,
          "cdna_start": 787,
          "cdna_end": null,
          "cdna_length": 1452,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000550726.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.494A>C",
          "hgvs_p": "p.His165Pro",
          "transcript": "ENST00000542360.1",
          "protein_id": "ENSP00000443486.1",
          "transcript_support_level": 2,
          "aa_start": 165,
          "aa_end": null,
          "aa_length": 262,
          "cds_start": 494,
          "cds_end": null,
          "cds_length": 789,
          "cdna_start": 727,
          "cdna_end": null,
          "cdna_length": 1484,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000542360.1"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.122A>C",
          "hgvs_p": "p.His41Pro",
          "transcript": "ENST00000855896.1",
          "protein_id": "ENSP00000525955.1",
          "transcript_support_level": null,
          "aa_start": 41,
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          "cds_start": 122,
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          "cds_length": 417,
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        {
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          ],
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          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "XM_006719541.5",
          "protein_id": "XP_006719604.1",
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          "aa_length": 477,
          "cds_start": 929,
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          "cdna_start": 1133,
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          "cdna_length": 7752,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_006719541.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.872A>C",
          "hgvs_p": "p.His291Pro",
          "transcript": "XM_047429297.1",
          "protein_id": "XP_047285253.1",
          "transcript_support_level": null,
          "aa_start": 291,
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          "cds_start": 872,
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          "mane_select": null,
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        },
        {
          "aa_ref": "H",
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          "strand": true,
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          ],
          "exon_rank": 10,
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          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "XM_005269059.6",
          "protein_id": "XP_005269116.1",
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          "aa_end": null,
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        {
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          ],
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          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.929A>C",
          "hgvs_p": "p.His310Pro",
          "transcript": "XM_006719542.5",
          "protein_id": "XP_006719605.1",
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          "cds_start": 929,
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "RBMS2",
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          "hgvs_c": "c.839A>C",
          "hgvs_p": "p.His280Pro",
          "transcript": "XM_024449115.2",
          "protein_id": "XP_024304883.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "RBMS2",
          "gene_hgnc_id": 9909,
          "hgvs_c": "c.839A>C",
          "hgvs_p": "p.His280Pro",
          "transcript": "XM_024449116.2",
          "protein_id": "XP_024304884.1",
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          "cds_start": 839,
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          "cdna_start": 959,
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          "cdna_length": 7578,
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      ],
      "gene_symbol": "RBMS2",
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      "gnomad_genomes_ac": null,
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      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.1052735447883606,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.4,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.538,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.