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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-57256070-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=57256070&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 57256070,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001351204.2",
      "consequences": [
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2552A>G",
          "hgvs_p": "p.Gln851Arg",
          "transcript": "NM_001394031.1",
          "protein_id": "NP_001380960.1",
          "transcript_support_level": null,
          "aa_start": 851,
          "aa_end": null,
          "aa_length": 990,
          "cds_start": 2552,
          "cds_end": null,
          "cds_length": 2973,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000402412.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394031.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2552A>G",
          "hgvs_p": "p.Gln851Arg",
          "transcript": "ENST00000402412.6",
          "protein_id": "ENSP00000385839.1",
          "transcript_support_level": 1,
          "aa_start": 851,
          "aa_end": null,
          "aa_length": 990,
          "cds_start": 2552,
          "cds_end": null,
          "cds_length": 2973,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001394031.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000402412.6"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2510A>G",
          "hgvs_p": "p.Gln837Arg",
          "transcript": "ENST00000347140.7",
          "protein_id": "ENSP00000317903.6",
          "transcript_support_level": 1,
          "aa_start": 837,
          "aa_end": null,
          "aa_length": 976,
          "cds_start": 2510,
          "cds_end": null,
          "cds_length": 2931,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000347140.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "n.2346A>G",
          "hgvs_p": null,
          "transcript": "ENST00000393811.6",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000393811.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000258830",
          "gene_hgnc_id": null,
          "hgvs_c": "n.*1602A>G",
          "hgvs_p": null,
          "transcript": "ENST00000548184.1",
          "protein_id": "ENSP00000477227.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000548184.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000258830",
          "gene_hgnc_id": null,
          "hgvs_c": "n.*1602A>G",
          "hgvs_p": null,
          "transcript": "ENST00000548184.1",
          "protein_id": "ENSP00000477227.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000548184.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2708A>G",
          "hgvs_p": "p.Gln903Arg",
          "transcript": "NM_001351204.2",
          "protein_id": "NP_001338133.1",
          "transcript_support_level": null,
          "aa_start": 903,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 2708,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351204.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2708A>G",
          "hgvs_p": "p.Gln903Arg",
          "transcript": "NM_001351205.2",
          "protein_id": "NP_001338134.1",
          "transcript_support_level": null,
          "aa_start": 903,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 2708,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351205.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2708A>G",
          "hgvs_p": "p.Gln903Arg",
          "transcript": "NM_001351206.2",
          "protein_id": "NP_001338135.1",
          "transcript_support_level": null,
          "aa_start": 903,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 2708,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351206.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2678A>G",
          "hgvs_p": "p.Gln893Arg",
          "transcript": "NM_001351207.2",
          "protein_id": "NP_001338136.1",
          "transcript_support_level": null,
          "aa_start": 893,
          "aa_end": null,
          "aa_length": 1032,
          "cds_start": 2678,
          "cds_end": null,
          "cds_length": 3099,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351207.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2654A>G",
          "hgvs_p": "p.Gln885Arg",
          "transcript": "NM_001351208.2",
          "protein_id": "NP_001338137.1",
          "transcript_support_level": null,
          "aa_start": 885,
          "aa_end": null,
          "aa_length": 1024,
          "cds_start": 2654,
          "cds_end": null,
          "cds_length": 3075,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351208.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2612A>G",
          "hgvs_p": "p.Gln871Arg",
          "transcript": "NM_001330121.2",
          "protein_id": "NP_001317050.1",
          "transcript_support_level": null,
          "aa_start": 871,
          "aa_end": null,
          "aa_length": 1010,
          "cds_start": 2612,
          "cds_end": null,
          "cds_length": 3033,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330121.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2612A>G",
          "hgvs_p": "p.Gln871Arg",
          "transcript": "NM_001330122.2",
          "protein_id": "NP_001317051.1",
          "transcript_support_level": null,
          "aa_start": 871,
          "aa_end": null,
          "aa_length": 1010,
          "cds_start": 2612,
          "cds_end": null,
          "cds_length": 3033,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330122.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2612A>G",
          "hgvs_p": "p.Gln871Arg",
          "transcript": "ENST00000403821.6",
          "protein_id": "ENSP00000385169.2",
          "transcript_support_level": 5,
          "aa_start": 871,
          "aa_end": null,
          "aa_length": 1010,
          "cds_start": 2612,
          "cds_end": null,
          "cds_length": 3033,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000403821.6"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2606A>G",
          "hgvs_p": "p.Gln869Arg",
          "transcript": "NM_001351209.2",
          "protein_id": "NP_001338138.1",
          "transcript_support_level": null,
          "aa_start": 869,
          "aa_end": null,
          "aa_length": 1008,
          "cds_start": 2606,
          "cds_end": null,
          "cds_length": 3027,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351209.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2606A>G",
          "hgvs_p": "p.Gln869Arg",
          "transcript": "ENST00000878714.1",
          "protein_id": "ENSP00000548773.1",
          "transcript_support_level": null,
          "aa_start": 869,
          "aa_end": null,
          "aa_length": 1008,
          "cds_start": 2606,
          "cds_end": null,
          "cds_length": 3027,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000878714.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2606A>G",
          "hgvs_p": "p.Gln869Arg",
          "transcript": "ENST00000878717.1",
          "protein_id": "ENSP00000548776.1",
          "transcript_support_level": null,
          "aa_start": 869,
          "aa_end": null,
          "aa_length": 1008,
          "cds_start": 2606,
          "cds_end": null,
          "cds_length": 3027,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000878717.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2576A>G",
          "hgvs_p": "p.Gln859Arg",
          "transcript": "NM_001351211.2",
          "protein_id": "NP_001338140.1",
          "transcript_support_level": null,
          "aa_start": 859,
          "aa_end": null,
          "aa_length": 998,
          "cds_start": 2576,
          "cds_end": null,
          "cds_length": 2997,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351211.2"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2576A>G",
          "hgvs_p": "p.Gln859Arg",
          "transcript": "ENST00000878710.1",
          "protein_id": "ENSP00000548769.1",
          "transcript_support_level": null,
          "aa_start": 859,
          "aa_end": null,
          "aa_length": 998,
          "cds_start": 2576,
          "cds_end": null,
          "cds_length": 2997,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000878710.1"
        },
        {
          "aa_ref": "Q",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "R3HDM2",
          "gene_hgnc_id": 29167,
          "hgvs_c": "c.2576A>G",
          "hgvs_p": "p.Gln859Arg",
          "transcript": "ENST00000878711.1",
          "protein_id": "ENSP00000548770.1",
          "transcript_support_level": null,
          "aa_start": 859,
          "aa_end": null,
          "aa_length": 998,
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      "computational_score_selected": 0.2882359027862549,
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      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001351204.2",
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          "effects": [
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        {
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          "criteria": [
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            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000548184.1",
          "gene_symbol": "ENSG00000258830",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
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          "hgvs_c": "n.*1602A>G",
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        {
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          "criteria": [
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            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000727836.1",
          "gene_symbol": "ENSG00000295078",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.808+15855T>C",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.