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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-7485410-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=7485410&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 7485410,
      "ref": "A",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_004244.6",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "NM_203416.4",
          "protein_id": "NP_981961.2",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1121,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3366,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000432237.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_203416.4"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000432237.3",
          "protein_id": "ENSP00000403885.2",
          "transcript_support_level": 1,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1121,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3366,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_203416.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000432237.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000359156.8",
          "protein_id": "ENSP00000352071.4",
          "transcript_support_level": 1,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1156,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3471,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000359156.8"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "NM_004244.6",
          "protein_id": "NP_004235.4",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1156,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3471,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004244.6"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2564T>G",
          "hgvs_p": "p.Met855Arg",
          "transcript": "ENST00000396620.7",
          "protein_id": "ENSP00000379863.3",
          "transcript_support_level": 2,
          "aa_start": 855,
          "aa_end": null,
          "aa_length": 1154,
          "cds_start": 2564,
          "cds_end": null,
          "cds_length": 3465,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396620.7"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2483T>G",
          "hgvs_p": "p.Met828Arg",
          "transcript": "ENST00000894019.1",
          "protein_id": "ENSP00000564078.1",
          "transcript_support_level": null,
          "aa_start": 828,
          "aa_end": null,
          "aa_length": 1127,
          "cds_start": 2483,
          "cds_end": null,
          "cds_length": 3384,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894019.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "NM_001370146.1",
          "protein_id": "NP_001357075.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1124,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3375,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370146.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "NM_001370145.1",
          "protein_id": "NP_001357074.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1121,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3366,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370145.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000894017.1",
          "protein_id": "ENSP00000564076.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1121,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3366,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894017.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960366.1",
          "protein_id": "ENSP00000630425.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1121,
          "cds_start": 2465,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960366.1"
        },
        {
          "aa_ref": "M",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960361.1",
          "protein_id": "ENSP00000630420.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1120,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3363,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960361.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960364.1",
          "protein_id": "ENSP00000630423.1",
          "transcript_support_level": null,
          "aa_start": 822,
          "aa_end": null,
          "aa_length": 1110,
          "cds_start": 2465,
          "cds_end": null,
          "cds_length": 3333,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000960364.1"
        },
        {
          "aa_ref": "M",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2429T>G",
          "hgvs_p": "p.Met810Arg",
          "transcript": "ENST00000541972.5",
          "protein_id": "ENSP00000444071.1",
          "transcript_support_level": 5,
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          "aa_length": 1109,
          "cds_start": 2429,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000541972.5"
        },
        {
          "aa_ref": "M",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960362.1",
          "protein_id": "ENSP00000630421.1",
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        {
          "aa_ref": "M",
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          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960363.1",
          "protein_id": "ENSP00000630422.1",
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000960363.1"
        },
        {
          "aa_ref": "M",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg",
          "transcript": "ENST00000960368.1",
          "protein_id": "ENSP00000630427.1",
          "transcript_support_level": null,
          "aa_start": 822,
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          "aa_length": 1018,
          "cds_start": 2465,
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        },
        {
          "aa_ref": "M",
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2144T>G",
          "hgvs_p": "p.Met715Arg",
          "transcript": "ENST00000894018.1",
          "protein_id": "ENSP00000564077.1",
          "transcript_support_level": null,
          "aa_start": 715,
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        {
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.1091T>G",
          "hgvs_p": "p.Met364Arg",
          "transcript": "ENST00000960365.1",
          "protein_id": "ENSP00000630424.1",
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        },
        {
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          ],
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          "gene_symbol": "CD163",
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          "hgvs_c": "c.2465T>G",
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          "biotype": "protein_coding",
          "feature": "XM_047429895.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CD163",
          "gene_hgnc_id": 1631,
          "hgvs_c": "c.2564T>G",
          "hgvs_p": "p.Met855Arg",
          "transcript": "XM_024449278.2",
          "protein_id": "XP_024305046.1",
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        {
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          "hgvs_c": "n.2416T>G",
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          "biotype": "pseudogene",
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        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
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          "gene_symbol": "CD163",
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          "hgvs_c": "n.-66T>G",
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          "transcript": "ENST00000539632.1",
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "pseudogene",
          "feature": "ENST00000539632.1"
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      ],
      "gene_symbol": "CD163",
      "gene_hgnc_id": 1631,
      "dbsnp": "rs186309136",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.6237356066703796,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.10999999940395355,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.299,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.1109,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.24,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.874,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.11,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_004244.6",
          "gene_symbol": "CD163",
          "hgnc_id": 1631,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.2465T>G",
          "hgvs_p": "p.Met822Arg"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}