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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-883559-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=883559&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 883559,
      "ref": "A",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "ENST00000315939.11",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4410A>G",
          "hgvs_p": "p.Ser1470Ser",
          "transcript": "NM_213655.5",
          "protein_id": "NP_998820.3",
          "transcript_support_level": null,
          "aa_start": 1470,
          "aa_end": null,
          "aa_length": 2634,
          "cds_start": 4410,
          "cds_end": null,
          "cds_length": 7905,
          "cdna_start": 5397,
          "cdna_end": null,
          "cdna_length": 11552,
          "mane_select": null,
          "mane_plus": "ENST00000340908.9",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4410A>G",
          "hgvs_p": "p.Ser1470Ser",
          "transcript": "ENST00000340908.9",
          "protein_id": "ENSP00000341292.5",
          "transcript_support_level": 5,
          "aa_start": 1470,
          "aa_end": null,
          "aa_length": 2634,
          "cds_start": 4410,
          "cds_end": null,
          "cds_length": 7905,
          "cdna_start": 5397,
          "cdna_end": null,
          "cdna_length": 11552,
          "mane_select": null,
          "mane_plus": "NM_213655.5",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3654A>G",
          "hgvs_p": "p.Ser1218Ser",
          "transcript": "NM_018979.4",
          "protein_id": "NP_061852.3",
          "transcript_support_level": null,
          "aa_start": 1218,
          "aa_end": null,
          "aa_length": 2382,
          "cds_start": 3654,
          "cds_end": null,
          "cds_length": 7149,
          "cdna_start": 4641,
          "cdna_end": null,
          "cdna_length": 10796,
          "mane_select": "ENST00000315939.11",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3654A>G",
          "hgvs_p": "p.Ser1218Ser",
          "transcript": "ENST00000315939.11",
          "protein_id": "ENSP00000313059.6",
          "transcript_support_level": 1,
          "aa_start": 1218,
          "aa_end": null,
          "aa_length": 2382,
          "cds_start": 3654,
          "cds_end": null,
          "cds_length": 7149,
          "cdna_start": 4641,
          "cdna_end": null,
          "cdna_length": 10796,
          "mane_select": "NM_018979.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4893A>G",
          "hgvs_p": "p.Ser1631Ser",
          "transcript": "ENST00000530271.6",
          "protein_id": "ENSP00000433548.3",
          "transcript_support_level": 1,
          "aa_start": 1631,
          "aa_end": null,
          "aa_length": 2833,
          "cds_start": 4893,
          "cds_end": null,
          "cds_length": 8502,
          "cdna_start": 5536,
          "cdna_end": null,
          "cdna_length": 11804,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.2913A>G",
          "hgvs_p": "p.Ser971Ser",
          "transcript": "ENST00000535572.5",
          "protein_id": "ENSP00000441972.1",
          "transcript_support_level": 1,
          "aa_start": 971,
          "aa_end": null,
          "aa_length": 2134,
          "cds_start": 2913,
          "cds_end": null,
          "cds_length": 6405,
          "cdna_start": 3886,
          "cdna_end": null,
          "cdna_length": 9886,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4434A>G",
          "hgvs_p": "p.Ser1478Ser",
          "transcript": "NM_001184985.2",
          "protein_id": "NP_001171914.1",
          "transcript_support_level": null,
          "aa_start": 1478,
          "aa_end": null,
          "aa_length": 2642,
          "cds_start": 4434,
          "cds_end": null,
          "cds_length": 7929,
          "cdna_start": 5421,
          "cdna_end": null,
          "cdna_length": 11576,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4434A>G",
          "hgvs_p": "p.Ser1478Ser",
          "transcript": "ENST00000537687.5",
          "protein_id": "ENSP00000444465.1",
          "transcript_support_level": 5,
          "aa_start": 1478,
          "aa_end": null,
          "aa_length": 2642,
          "cds_start": 4434,
          "cds_end": null,
          "cds_length": 7929,
          "cdna_start": 5077,
          "cdna_end": null,
          "cdna_length": 11232,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.2913A>G",
          "hgvs_p": "p.Ser971Ser",
          "transcript": "NM_014823.3",
          "protein_id": "NP_055638.2",
          "transcript_support_level": null,
          "aa_start": 971,
          "aa_end": null,
          "aa_length": 2134,
          "cds_start": 2913,
          "cds_end": null,
          "cds_length": 6405,
          "cdna_start": 3900,
          "cdna_end": null,
          "cdna_length": 10052,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.2433A>G",
          "hgvs_p": "p.Ser811Ser",
          "transcript": "ENST00000675631.1",
          "protein_id": "ENSP00000502415.1",
          "transcript_support_level": null,
          "aa_start": 811,
          "aa_end": null,
          "aa_length": 1975,
          "cds_start": 2433,
          "cds_end": null,
          "cds_length": 5928,
          "cdna_start": 2702,
          "cdna_end": null,
          "cdna_length": 8857,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.1101A>G",
          "hgvs_p": "p.Ser367Ser",
          "transcript": "ENST00000676347.1",
          "protein_id": "ENSP00000501875.1",
          "transcript_support_level": null,
          "aa_start": 367,
          "aa_end": null,
          "aa_length": 1531,
          "cds_start": 1101,
          "cds_end": null,
          "cds_length": 4596,
          "cdna_start": 1101,
          "cdna_end": null,
          "cdna_length": 4596,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.354A>G",
          "hgvs_p": "p.Ser118Ser",
          "transcript": "ENST00000534872.1",
          "protein_id": "ENSP00000446253.1",
          "transcript_support_level": 3,
          "aa_start": 118,
          "aa_end": null,
          "aa_length": 193,
          "cds_start": 354,
          "cds_end": null,
          "cds_length": 584,
          "cdna_start": 354,
          "cdna_end": null,
          "cdna_length": 584,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4893A>G",
          "hgvs_p": "p.Ser1631Ser",
          "transcript": "XM_011520997.4",
          "protein_id": "XP_011519299.1",
          "transcript_support_level": null,
          "aa_start": 1631,
          "aa_end": null,
          "aa_length": 2795,
          "cds_start": 4893,
          "cds_end": null,
          "cds_length": 8388,
          "cdna_start": 5880,
          "cdna_end": null,
          "cdna_length": 12035,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4890A>G",
          "hgvs_p": "p.Ser1630Ser",
          "transcript": "XM_011520998.3",
          "protein_id": "XP_011519300.1",
          "transcript_support_level": null,
          "aa_start": 1630,
          "aa_end": null,
          "aa_length": 2794,
          "cds_start": 4890,
          "cds_end": null,
          "cds_length": 8385,
          "cdna_start": 5877,
          "cdna_end": null,
          "cdna_length": 12032,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4893A>G",
          "hgvs_p": "p.Ser1631Ser",
          "transcript": "XM_011520999.3",
          "protein_id": "XP_011519301.1",
          "transcript_support_level": null,
          "aa_start": 1631,
          "aa_end": null,
          "aa_length": 2794,
          "cds_start": 4893,
          "cds_end": null,
          "cds_length": 8385,
          "cdna_start": 5880,
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          "cdna_length": 12032,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4893A>G",
          "hgvs_p": "p.Ser1631Ser",
          "transcript": "XM_011521000.3",
          "protein_id": "XP_011519302.1",
          "transcript_support_level": null,
          "aa_start": 1631,
          "aa_end": null,
          "aa_length": 2730,
          "cds_start": 4893,
          "cds_end": null,
          "cds_length": 8193,
          "cdna_start": 5880,
          "cdna_end": null,
          "cdna_length": 11840,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4893A>G",
          "hgvs_p": "p.Ser1631Ser",
          "transcript": "XM_047429374.1",
          "protein_id": "XP_047285330.1",
          "transcript_support_level": null,
          "aa_start": 1631,
          "aa_end": null,
          "aa_length": 2729,
          "cds_start": 4893,
          "cds_end": null,
          "cds_length": 8190,
          "cdna_start": 5880,
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          "cdna_length": 11837,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4614A>G",
          "hgvs_p": "p.Ser1538Ser",
          "transcript": "XM_011521001.3",
          "protein_id": "XP_011519303.1",
          "transcript_support_level": null,
          "aa_start": 1538,
          "aa_end": null,
          "aa_length": 2702,
          "cds_start": 4614,
          "cds_end": null,
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          "cdna_start": 5601,
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          "cdna_length": 11756,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4614A>G",
          "hgvs_p": "p.Ser1538Ser",
          "transcript": "XM_047429375.1",
          "protein_id": "XP_047285331.1",
          "transcript_support_level": null,
          "aa_start": 1538,
          "aa_end": null,
          "aa_length": 2701,
          "cds_start": 4614,
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          "cds_length": 8106,
          "cdna_start": 5601,
          "cdna_end": null,
          "cdna_length": 11753,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4431A>G",
          "hgvs_p": "p.Ser1477Ser",
          "transcript": "XM_011521002.3",
          "protein_id": "XP_011519304.1",
          "transcript_support_level": null,
          "aa_start": 1477,
          "aa_end": null,
          "aa_length": 2641,
          "cds_start": 4431,
          "cds_end": null,
          "cds_length": 7926,
          "cdna_start": 5418,
          "cdna_end": null,
          "cdna_length": 11573,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 28,
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      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.58,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.882,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -21,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -21,
          "benign_score": 21,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000315939.11",
          "gene_symbol": "WNK1",
          "hgnc_id": 14540,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.3654A>G",
          "hgvs_p": "p.Ser1218Ser"
        }
      ],
      "clinvar_disease": " hereditary sensory and autonomic, type 2A,Neuropathy,Pseudohypoaldosteronism type 2C,not provided,not specified",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:3 B:3",
      "phenotype_combined": "Pseudohypoaldosteronism type 2C|Neuropathy, hereditary sensory and autonomic, type 2A;Pseudohypoaldosteronism type 2C|not specified|not provided",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}