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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-885406-T-TAGC (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=885406&ref=T&alt=TAGC&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 885406,
      "ref": "T",
      "alt": "TAGC",
      "effect": "disruptive_inframe_insertion",
      "transcript": "NM_001184985.2",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.5361_5363dupCAG",
          "hgvs_p": "p.Ser1788dup",
          "transcript": "NM_213655.5",
          "protein_id": "NP_998820.3",
          "transcript_support_level": null,
          "aa_start": 1788,
          "aa_end": null,
          "aa_length": 2634,
          "cds_start": 5364,
          "cds_end": null,
          "cds_length": 7905,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "ENST00000340908.9",
          "biotype": "protein_coding",
          "feature": "NM_213655.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.5361_5363dupCAG",
          "hgvs_p": "p.Ser1788dup",
          "transcript": "ENST00000340908.9",
          "protein_id": "ENSP00000341292.5",
          "transcript_support_level": 5,
          "aa_start": 1788,
          "aa_end": null,
          "aa_length": 2634,
          "cds_start": 5364,
          "cds_end": null,
          "cds_length": 7905,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": "NM_213655.5",
          "biotype": "protein_coding",
          "feature": "ENST00000340908.9"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4605_4607dupCAG",
          "hgvs_p": "p.Ser1536dup",
          "transcript": "NM_018979.4",
          "protein_id": "NP_061852.3",
          "transcript_support_level": null,
          "aa_start": 1536,
          "aa_end": null,
          "aa_length": 2382,
          "cds_start": 4608,
          "cds_end": null,
          "cds_length": 7149,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000315939.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_018979.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4605_4607dupCAG",
          "hgvs_p": "p.Ser1536dup",
          "transcript": "ENST00000315939.11",
          "protein_id": "ENSP00000313059.6",
          "transcript_support_level": 1,
          "aa_start": 1536,
          "aa_end": null,
          "aa_length": 2382,
          "cds_start": 4608,
          "cds_end": null,
          "cds_length": 7149,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_018979.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000315939.11"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.5844_5846dupCAG",
          "hgvs_p": "p.Ser1949dup",
          "transcript": "ENST00000530271.6",
          "protein_id": "ENSP00000433548.3",
          "transcript_support_level": 1,
          "aa_start": 1949,
          "aa_end": null,
          "aa_length": 2833,
          "cds_start": 5847,
          "cds_end": null,
          "cds_length": 8502,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000530271.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3864_3866dupCAG",
          "hgvs_p": "p.Ser1289dup",
          "transcript": "ENST00000535572.5",
          "protein_id": "ENSP00000441972.1",
          "transcript_support_level": 1,
          "aa_start": 1289,
          "aa_end": null,
          "aa_length": 2134,
          "cds_start": 3867,
          "cds_end": null,
          "cds_length": 6405,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000535572.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.5385_5387dupCAG",
          "hgvs_p": "p.Ser1796dup",
          "transcript": "NM_001184985.2",
          "protein_id": "NP_001171914.1",
          "transcript_support_level": null,
          "aa_start": 1796,
          "aa_end": null,
          "aa_length": 2642,
          "cds_start": 5388,
          "cds_end": null,
          "cds_length": 7929,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001184985.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.5385_5387dupCAG",
          "hgvs_p": "p.Ser1796dup",
          "transcript": "ENST00000537687.5",
          "protein_id": "ENSP00000444465.1",
          "transcript_support_level": 5,
          "aa_start": 1796,
          "aa_end": null,
          "aa_length": 2642,
          "cds_start": 5388,
          "cds_end": null,
          "cds_length": 7929,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000537687.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4602_4604dupCAG",
          "hgvs_p": "p.Ser1535dup",
          "transcript": "ENST00000899151.1",
          "protein_id": "ENSP00000569210.1",
          "transcript_support_level": null,
          "aa_start": 1535,
          "aa_end": null,
          "aa_length": 2381,
          "cds_start": 4605,
          "cds_end": null,
          "cds_length": 7146,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899151.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4521_4523dupCAG",
          "hgvs_p": "p.Ser1508dup",
          "transcript": "ENST00000928791.1",
          "protein_id": "ENSP00000598850.1",
          "transcript_support_level": null,
          "aa_start": 1508,
          "aa_end": null,
          "aa_length": 2354,
          "cds_start": 4524,
          "cds_end": null,
          "cds_length": 7065,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928791.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.4143_4145dupCAG",
          "hgvs_p": "p.Ser1382dup",
          "transcript": "ENST00000899157.1",
          "protein_id": "ENSP00000569216.1",
          "transcript_support_level": null,
          "aa_start": 1382,
          "aa_end": null,
          "aa_length": 2228,
          "cds_start": 4146,
          "cds_end": null,
          "cds_length": 6687,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899157.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3867_3869dupCAG",
          "hgvs_p": "p.Ser1290dup",
          "transcript": "ENST00000899150.1",
          "protein_id": "ENSP00000569209.1",
          "transcript_support_level": null,
          "aa_start": 1290,
          "aa_end": null,
          "aa_length": 2136,
          "cds_start": 3870,
          "cds_end": null,
          "cds_length": 6411,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899150.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3864_3866dupCAG",
          "hgvs_p": "p.Ser1289dup",
          "transcript": "ENST00000899152.1",
          "protein_id": "ENSP00000569211.1",
          "transcript_support_level": null,
          "aa_start": 1289,
          "aa_end": null,
          "aa_length": 2135,
          "cds_start": 3867,
          "cds_end": null,
          "cds_length": 6408,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899152.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3867_3869dupCAG",
          "hgvs_p": "p.Ser1290dup",
          "transcript": "ENST00000899156.1",
          "protein_id": "ENSP00000569215.1",
          "transcript_support_level": null,
          "aa_start": 1290,
          "aa_end": null,
          "aa_length": 2135,
          "cds_start": 3870,
          "cds_end": null,
          "cds_length": 6408,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899156.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3864_3866dupCAG",
          "hgvs_p": "p.Ser1289dup",
          "transcript": "NM_014823.3",
          "protein_id": "NP_055638.2",
          "transcript_support_level": null,
          "aa_start": 1289,
          "aa_end": null,
          "aa_length": 2134,
          "cds_start": 3867,
          "cds_end": null,
          "cds_length": 6405,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_014823.3"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3780_3782dupCAG",
          "hgvs_p": "p.Ser1261dup",
          "transcript": "ENST00000899153.1",
          "protein_id": "ENSP00000569212.1",
          "transcript_support_level": null,
          "aa_start": 1261,
          "aa_end": null,
          "aa_length": 2107,
          "cds_start": 3783,
          "cds_end": null,
          "cds_length": 6324,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899153.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3783_3785dupCAG",
          "hgvs_p": "p.Ser1262dup",
          "transcript": "ENST00000899154.1",
          "protein_id": "ENSP00000569213.1",
          "transcript_support_level": null,
          "aa_start": 1262,
          "aa_end": null,
          "aa_length": 2107,
          "cds_start": 3786,
          "cds_end": null,
          "cds_length": 6324,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899154.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3780_3782dupCAG",
          "hgvs_p": "p.Ser1261dup",
          "transcript": "ENST00000899155.1",
          "protein_id": "ENSP00000569214.1",
          "transcript_support_level": null,
          "aa_start": 1261,
          "aa_end": null,
          "aa_length": 2106,
          "cds_start": 3783,
          "cds_end": null,
          "cds_length": 6321,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899155.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WNK1",
          "gene_hgnc_id": 14540,
          "hgvs_c": "c.3384_3386dupCAG",
          "hgvs_p": "p.Ser1129dup",
          "transcript": "ENST00000675631.1",
          "protein_id": "ENSP00000502415.1",
          "transcript_support_level": null,
          "aa_start": 1129,
          "aa_end": null,
          "aa_length": 1975,
          "cds_start": 3387,
          "cds_end": null,
          "cds_length": 5928,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000675631.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "SS",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
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      "gnomad_genomes_ac": null,
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      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
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      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
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      "bayesdelnoaf_score": null,
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      "phylop100way_score": 1.402,
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      "acmg_score": 3,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PM4_Supporting",
      "acmg_by_gene": [
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          "score": 3,
          "benign_score": 0,
          "pathogenic_score": 3,
          "criteria": [
            "PM2",
            "PM4_Supporting"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001184985.2",
          "gene_symbol": "WNK1",
          "hgnc_id": 14540,
          "effects": [
            "disruptive_inframe_insertion"
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          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.5385_5387dupCAG",
          "hgvs_p": "p.Ser1796dup"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.