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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-96289192-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=96289192&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 96289192,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_002595.5",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "NM_002595.5",
          "protein_id": "NP_002586.2",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1576,
          "cdna_end": null,
          "cdna_length": 4036,
          "mane_select": "ENST00000261211.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002595.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000261211.8",
          "protein_id": "ENSP00000261211.3",
          "transcript_support_level": 1,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1576,
          "cdna_end": null,
          "cdna_length": 4036,
          "mane_select": "NM_002595.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000261211.8"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1114G>A",
          "hgvs_p": "p.Glu372Lys",
          "transcript": "ENST00000859519.1",
          "protein_id": "ENSP00000529578.1",
          "transcript_support_level": null,
          "aa_start": 372,
          "aa_end": null,
          "aa_length": 530,
          "cds_start": 1114,
          "cds_end": null,
          "cds_length": 1593,
          "cdna_start": 1714,
          "cdna_end": null,
          "cdna_length": 3882,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859519.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1114G>A",
          "hgvs_p": "p.Glu372Lys",
          "transcript": "ENST00000964179.1",
          "protein_id": "ENSP00000634238.1",
          "transcript_support_level": null,
          "aa_start": 372,
          "aa_end": null,
          "aa_length": 530,
          "cds_start": 1114,
          "cds_end": null,
          "cds_length": 1593,
          "cdna_start": 1790,
          "cdna_end": null,
          "cdna_length": 3908,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000964179.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1111G>A",
          "hgvs_p": "p.Glu371Lys",
          "transcript": "ENST00000859521.1",
          "protein_id": "ENSP00000529580.1",
          "transcript_support_level": null,
          "aa_start": 371,
          "aa_end": null,
          "aa_length": 529,
          "cds_start": 1111,
          "cds_end": null,
          "cds_length": 1590,
          "cdna_start": 1624,
          "cdna_end": null,
          "cdna_length": 3792,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859521.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "NM_001170464.4",
          "protein_id": "NP_001163935.1",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1576,
          "cdna_end": null,
          "cdna_length": 4600,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001170464.4"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000543119.6",
          "protein_id": "ENSP00000444459.2",
          "transcript_support_level": 2,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1617,
          "cdna_end": null,
          "cdna_length": 2442,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000543119.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000859520.1",
          "protein_id": "ENSP00000529579.1",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1817,
          "cdna_end": null,
          "cdna_length": 3940,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859520.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000964181.1",
          "protein_id": "ENSP00000634240.1",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1347,
          "cdna_end": null,
          "cdna_length": 3511,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000964181.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000964182.1",
          "protein_id": "ENSP00000634241.1",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
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          "cdna_start": 1257,
          "cdna_end": null,
          "cdna_length": 3425,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "E",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "ENST00000964183.1",
          "protein_id": "ENSP00000634242.1",
          "transcript_support_level": null,
          "aa_start": 365,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1093,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1383,
          "cdna_end": null,
          "cdna_length": 3546,
          "mane_select": null,
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        },
        {
          "aa_ref": "E",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 16,
          "intron_rank": null,
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          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1030G>A",
          "hgvs_p": "p.Glu344Lys",
          "transcript": "ENST00000859522.1",
          "protein_id": "ENSP00000529581.1",
          "transcript_support_level": null,
          "aa_start": 344,
          "aa_end": null,
          "aa_length": 502,
          "cds_start": 1030,
          "cds_end": null,
          "cds_length": 1509,
          "cdna_start": 1506,
          "cdna_end": null,
          "cdna_length": 3674,
          "mane_select": null,
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        {
          "aa_ref": "E",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
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          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1030G>A",
          "hgvs_p": "p.Glu344Lys",
          "transcript": "ENST00000964178.1",
          "protein_id": "ENSP00000634237.1",
          "transcript_support_level": null,
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          "cds_start": 1030,
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          "cds_length": 1509,
          "cdna_start": 1631,
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          "biotype": "protein_coding",
          "feature": "ENST00000964178.1"
        },
        {
          "aa_ref": "E",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.967G>A",
          "hgvs_p": "p.Glu323Lys",
          "transcript": "ENST00000964177.1",
          "protein_id": "ENSP00000634236.1",
          "transcript_support_level": null,
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          "aa_end": null,
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          "cds_start": 967,
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        {
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          "intron_rank": null,
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          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.967G>A",
          "hgvs_p": "p.Glu323Lys",
          "transcript": "ENST00000964184.1",
          "protein_id": "ENSP00000634243.1",
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          "cds_start": 967,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000964184.1"
        },
        {
          "aa_ref": "E",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
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          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.934G>A",
          "hgvs_p": "p.Glu312Lys",
          "transcript": "ENST00000542666.5",
          "protein_id": "ENSP00000442926.1",
          "transcript_support_level": 2,
          "aa_start": 312,
          "aa_end": null,
          "aa_length": 470,
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          "cdna_start": 1064,
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          "biotype": "protein_coding",
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        {
          "aa_ref": "E",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.928G>A",
          "hgvs_p": "p.Glu310Lys",
          "transcript": "ENST00000859518.1",
          "protein_id": "ENSP00000529577.1",
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        {
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.811G>A",
          "hgvs_p": "p.Glu271Lys",
          "transcript": "ENST00000964180.1",
          "protein_id": "ENSP00000634239.1",
          "transcript_support_level": null,
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        },
        {
          "aa_ref": "E",
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          "consequences": [
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          ],
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          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "XM_017019405.2",
          "protein_id": "XP_016874894.1",
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          "cdna_end": null,
          "cdna_length": 3627,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017019405.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CDK17",
          "gene_hgnc_id": 8750,
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys",
          "transcript": "XM_017019406.2",
          "protein_id": "XP_016874895.1",
          "transcript_support_level": null,
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          "cds_start": 1093,
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        {
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        {
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          "biotype": "pseudogene",
          "feature": "ENST00000553042.1"
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      ],
      "gene_symbol": "CDK17",
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      "dbsnp": null,
      "frequency_reference_population": 6.8417046e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.8417e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.6856972575187683,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.019999999552965164,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.492,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.8091,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.19,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.905,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.02,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
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          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_002595.5",
          "gene_symbol": "CDK17",
          "hgnc_id": 8750,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.1093G>A",
          "hgvs_p": "p.Glu365Lys"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.