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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-98781200-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=98781200&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 98781200,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001352186.2",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3358T>C",
          "hgvs_p": "p.Ser1120Pro",
          "transcript": "NM_001352186.2",
          "protein_id": "NP_001339115.1",
          "transcript_support_level": null,
          "aa_start": 1120,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 3358,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000683438.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352186.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3358T>C",
          "hgvs_p": "p.Ser1120Pro",
          "transcript": "ENST00000683438.2",
          "protein_id": "ENSP00000508105.1",
          "transcript_support_level": null,
          "aa_start": 1120,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 3358,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001352186.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000683438.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3283T>C",
          "hgvs_p": "p.Ser1095Pro",
          "transcript": "ENST00000547776.6",
          "protein_id": "ENSP00000449629.2",
          "transcript_support_level": 1,
          "aa_start": 1095,
          "aa_end": null,
          "aa_length": 1248,
          "cds_start": 3283,
          "cds_end": null,
          "cds_length": 3747,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000547776.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1831T>C",
          "hgvs_p": "p.Ser611Pro",
          "transcript": "ENST00000547010.5",
          "protein_id": "ENSP00000448512.1",
          "transcript_support_level": 1,
          "aa_start": 611,
          "aa_end": null,
          "aa_length": 764,
          "cds_start": 1831,
          "cds_end": null,
          "cds_length": 2295,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000547010.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1096T>C",
          "hgvs_p": "p.Ser366Pro",
          "transcript": "ENST00000550778.5",
          "protein_id": "ENSP00000448744.1",
          "transcript_support_level": 1,
          "aa_start": 366,
          "aa_end": null,
          "aa_length": 531,
          "cds_start": 1096,
          "cds_end": null,
          "cds_length": 1596,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000550778.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1033T>C",
          "hgvs_p": "p.Ser345Pro",
          "transcript": "ENST00000549493.6",
          "protein_id": "ENSP00000448203.2",
          "transcript_support_level": 1,
          "aa_start": 345,
          "aa_end": null,
          "aa_length": 510,
          "cds_start": 1033,
          "cds_end": null,
          "cds_length": 1533,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000549493.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.961T>C",
          "hgvs_p": "p.Ser321Pro",
          "transcript": "ENST00000546960.5",
          "protein_id": "ENSP00000447839.1",
          "transcript_support_level": 1,
          "aa_start": 321,
          "aa_end": null,
          "aa_length": 460,
          "cds_start": 961,
          "cds_end": null,
          "cds_length": 1383,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000546960.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.853T>C",
          "hgvs_p": "p.Ser285Pro",
          "transcript": "ENST00000550693.6",
          "protein_id": "ENSP00000447999.2",
          "transcript_support_level": 1,
          "aa_start": 285,
          "aa_end": null,
          "aa_length": 450,
          "cds_start": 853,
          "cds_end": null,
          "cds_length": 1353,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000550693.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.781T>C",
          "hgvs_p": "p.Ser261Pro",
          "transcript": "ENST00000546568.5",
          "protein_id": "ENSP00000448205.1",
          "transcript_support_level": 1,
          "aa_start": 261,
          "aa_end": null,
          "aa_length": 426,
          "cds_start": 781,
          "cds_end": null,
          "cds_length": 1281,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000546568.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.781T>C",
          "hgvs_p": "p.Ser261Pro",
          "transcript": "ENST00000549558.6",
          "protein_id": "ENSP00000448993.2",
          "transcript_support_level": 1,
          "aa_start": 261,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 781,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000549558.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.577T>C",
          "hgvs_p": "p.Ser193Pro",
          "transcript": "ENST00000549025.6",
          "protein_id": "ENSP00000447312.2",
          "transcript_support_level": 1,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 357,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 1074,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000549025.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3355T>C",
          "hgvs_p": "p.Ser1119Pro",
          "transcript": "NM_001352188.1",
          "protein_id": "NP_001339117.1",
          "transcript_support_level": null,
          "aa_start": 1119,
          "aa_end": null,
          "aa_length": 1283,
          "cds_start": 3355,
          "cds_end": null,
          "cds_length": 3852,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352188.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3283T>C",
          "hgvs_p": "p.Ser1095Pro",
          "transcript": "NM_001352187.1",
          "protein_id": "NP_001339116.1",
          "transcript_support_level": null,
          "aa_start": 1095,
          "aa_end": null,
          "aa_length": 1260,
          "cds_start": 3283,
          "cds_end": null,
          "cds_length": 3783,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352187.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3283T>C",
          "hgvs_p": "p.Ser1095Pro",
          "transcript": "NM_001352185.1",
          "protein_id": "NP_001339114.1",
          "transcript_support_level": null,
          "aa_start": 1095,
          "aa_end": null,
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          "cds_start": 3283,
          "cds_end": null,
          "cds_length": 3780,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001352185.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.3283T>C",
          "hgvs_p": "p.Ser1095Pro",
          "transcript": "NM_152788.4",
          "protein_id": "NP_690001.3",
          "transcript_support_level": null,
          "aa_start": 1095,
          "aa_end": null,
          "aa_length": 1248,
          "cds_start": 3283,
          "cds_end": null,
          "cds_length": 3747,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_152788.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1036T>C",
          "hgvs_p": "p.Ser346Pro",
          "transcript": "NM_001352198.2",
          "protein_id": "NP_001339127.1",
          "transcript_support_level": null,
          "aa_start": 346,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1036,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001352198.2"
        },
        {
          "aa_ref": "S",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1036T>C",
          "hgvs_p": "p.Ser346Pro",
          "transcript": "NM_001352205.2",
          "protein_id": "NP_001339134.1",
          "transcript_support_level": null,
          "aa_start": 346,
          "aa_end": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001352205.2"
        },
        {
          "aa_ref": "S",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
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          ],
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          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1033T>C",
          "hgvs_p": "p.Ser345Pro",
          "transcript": "NM_181670.4",
          "protein_id": "NP_858056.2",
          "transcript_support_level": null,
          "aa_start": 345,
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          "aa_length": 510,
          "cds_start": 1033,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_181670.4"
        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1033T>C",
          "hgvs_p": "p.Ser345Pro",
          "transcript": "NM_001352195.2",
          "protein_id": "NP_001339124.1",
          "transcript_support_level": null,
          "aa_start": 345,
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          "cds_start": 1033,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352195.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1033T>C",
          "hgvs_p": "p.Ser345Pro",
          "transcript": "NM_001352196.2",
          "protein_id": "NP_001339125.1",
          "transcript_support_level": null,
          "aa_start": 345,
          "aa_end": null,
          "aa_length": 498,
          "cds_start": 1033,
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          "cds_length": 1497,
          "cdna_start": null,
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          "cdna_length": null,
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        {
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          "consequences": [
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          "gene_symbol": "ANKS1B",
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          "transcript": "ENST00000547362.5",
          "protein_id": "ENSP00000473277.1",
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          "biotype": "nonsense_mediated_decay",
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        {
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          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "n.13T>C",
          "hgvs_p": null,
          "transcript": "ENST00000549315.1",
          "protein_id": null,
          "transcript_support_level": 2,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000549315.1"
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      ],
      "gene_symbol": "ANKS1B",
      "gene_hgnc_id": 24600,
      "dbsnp": null,
      "frequency_reference_population": 0.0000042311444,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 6,
      "gnomad_exomes_af": 0.00000423114,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 6,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.7362087368965149,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.03999999910593033,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.492,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.424,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.03,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 9.252,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.04,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -4,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BS2",
      "acmg_by_gene": [
        {
          "score": -4,
          "benign_score": 4,
          "pathogenic_score": 0,
          "criteria": [
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_001352186.2",
          "gene_symbol": "ANKS1B",
          "hgnc_id": 24600,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.3358T>C",
          "hgvs_p": "p.Ser1120Pro"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}