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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 12-98914504-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=12&pos=98914504&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "12",
      "pos": 98914504,
      "ref": "A",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "ENST00000683438.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.2779-82368T>C",
          "hgvs_p": null,
          "transcript": "NM_001352186.2",
          "protein_id": "NP_001339115.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6322,
          "mane_select": "ENST00000683438.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.2779-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000683438.2",
          "protein_id": "ENSP00000508105.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6322,
          "mane_select": "NM_001352186.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": 17,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.2779-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000547776.6",
          "protein_id": "ENSP00000449629.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1248,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3747,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3885,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.1507-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000547010.5",
          "protein_id": "ENSP00000448512.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 764,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2295,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2595,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.592-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000550778.5",
          "protein_id": "ENSP00000448744.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 531,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1596,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1937,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000549493.6",
          "protein_id": "ENSP00000448203.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 510,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1533,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3328,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000546960.5",
          "protein_id": "ENSP00000447839.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 460,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1383,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1383,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000550693.6",
          "protein_id": "ENSP00000447999.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 450,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1353,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3372,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000546568.5",
          "protein_id": "ENSP00000448205.1",
          "transcript_support_level": 1,
          "aa_start": null,
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          "aa_length": 426,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1281,
          "cdna_start": null,
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          "cdna_length": 1281,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
          "hgvs_p": null,
          "transcript": "ENST00000549558.6",
          "protein_id": "ENSP00000448993.2",
          "transcript_support_level": 1,
          "aa_start": null,
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          "aa_length": 414,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 2268,
          "mane_select": null,
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        {
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          "canonical": false,
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          "intron_rank": 4,
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          "gene_symbol": "ANKS1B",
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          "transcript": "ENST00000549025.6",
          "protein_id": "ENSP00000447312.2",
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          "cdna_start": null,
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          "mane_select": null,
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          "canonical": false,
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          "consequences": [
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          "exon_count": 27,
          "intron_rank": 17,
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          "gene_symbol": "ANKS1B",
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          "transcript": "NM_001352187.1",
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          "gene_symbol": "ANKS1B",
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          "transcript": "NM_001352198.2",
          "protein_id": "NP_001339127.1",
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        {
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          "gene_symbol": "ANKS1B",
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          "gene_symbol": "ANKS1B",
          "gene_hgnc_id": 24600,
          "hgvs_c": "c.457-82368T>C",
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          "hgnc_id": 24600,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.2779-82368T>C",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}