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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-110641548-A-AT (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=110641548&ref=A&alt=AT&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 5,
          "criteria": [
            "PVS1_Moderate",
            "BP6",
            "BS2"
          ],
          "effects": [
            "frameshift_variant"
          ],
          "gene_symbol": "CARS2",
          "hgnc_id": 25695,
          "hgvs_c": "c.1683dupA",
          "hgvs_p": "p.Ser562fs",
          "inheritance_mode": "AR",
          "pathogenic_score": 2,
          "score": -3,
          "transcript": "NM_024537.4",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PVS1_Moderate,BP6,BS2",
      "acmg_score": -3,
      "allele_count_reference_population": 5415,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AT",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "13",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_disease": "CARS2-related disorder,Combined oxidative phosphorylation defect type 27,not provided",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:3 LB:2",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 564,
          "aa_ref": "K",
          "aa_start": 561,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1838,
          "cdna_start": 1706,
          "cds_end": null,
          "cds_length": 1695,
          "cds_start": 1683,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_024537.4",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1683dupA",
          "hgvs_p": "p.Ser562fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000257347.9",
          "protein_coding": true,
          "protein_id": "NP_078813.1",
          "strand": false,
          "transcript": "NM_024537.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 564,
          "aa_ref": "K",
          "aa_start": 561,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1838,
          "cdna_start": 1706,
          "cds_end": null,
          "cds_length": 1695,
          "cds_start": 1683,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000257347.9",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1683dupA",
          "hgvs_p": "p.Ser562fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_024537.4",
          "protein_coding": true,
          "protein_id": "ENSP00000257347.4",
          "strand": false,
          "transcript": "ENST00000257347.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 612,
          "aa_ref": "K",
          "aa_start": 609,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1976,
          "cdna_start": 1846,
          "cds_end": null,
          "cds_length": 1839,
          "cds_start": 1827,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000939453.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1827dupA",
          "hgvs_p": "p.Ser610fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609512.1",
          "strand": false,
          "transcript": "ENST00000939453.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 562,
          "aa_ref": "K",
          "aa_start": 559,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1843,
          "cdna_start": 1706,
          "cds_end": null,
          "cds_length": 1689,
          "cds_start": 1677,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000890914.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1677dupA",
          "hgvs_p": "p.Ser560fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560973.1",
          "strand": false,
          "transcript": "ENST00000890914.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 562,
          "aa_ref": "K",
          "aa_start": 559,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1854,
          "cdna_start": 1717,
          "cds_end": null,
          "cds_length": 1689,
          "cds_start": 1677,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000939450.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1677dupA",
          "hgvs_p": "p.Ser560fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609509.1",
          "strand": false,
          "transcript": "ENST00000939450.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 536,
          "aa_ref": "K",
          "aa_start": 533,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1767,
          "cdna_start": 1633,
          "cds_end": null,
          "cds_length": 1611,
          "cds_start": 1599,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000939451.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1599dupA",
          "hgvs_p": "p.Ser534fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609510.1",
          "strand": false,
          "transcript": "ENST00000939451.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 531,
          "aa_ref": "K",
          "aa_start": 528,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1762,
          "cdna_start": 1624,
          "cds_end": null,
          "cds_length": 1596,
          "cds_start": 1584,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000890913.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1584dupA",
          "hgvs_p": "p.Ser529fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560972.1",
          "strand": false,
          "transcript": "ENST00000890913.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 519,
          "aa_ref": "K",
          "aa_start": 516,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1709,
          "cdna_start": 1581,
          "cds_end": null,
          "cds_length": 1560,
          "cds_start": 1548,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000939452.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1548dupA",
          "hgvs_p": "p.Ser517fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609511.1",
          "strand": false,
          "transcript": "ENST00000939452.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 387,
          "aa_ref": "K",
          "aa_start": 384,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1288,
          "cdna_start": 1153,
          "cds_end": null,
          "cds_length": 1164,
          "cds_start": 1152,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000960810.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1152dupA",
          "hgvs_p": "p.Ser385fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630869.1",
          "strand": false,
          "transcript": "ENST00000960810.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 366,
          "aa_ref": "K",
          "aa_start": 363,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1235,
          "cdna_start": 1105,
          "cds_end": null,
          "cds_length": 1101,
          "cds_start": 1089,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000890915.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1089dupA",
          "hgvs_p": "p.Ser364fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560974.1",
          "strand": false,
          "transcript": "ENST00000890915.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 302,
          "aa_ref": "K",
          "aa_start": 299,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1949,
          "cdna_start": 1817,
          "cds_end": null,
          "cds_length": 909,
          "cds_start": 897,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_001352252.2",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.897dupA",
          "hgvs_p": "p.Ser300fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001339181.1",
          "strand": false,
          "transcript": "NM_001352252.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 451,
          "aa_ref": "K",
          "aa_start": 448,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1977,
          "cdna_start": 1845,
          "cds_end": null,
          "cds_length": 1356,
          "cds_start": 1344,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "XM_006719953.4",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1344dupA",
          "hgvs_p": "p.Ser449fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_006720016.1",
          "strand": false,
          "transcript": "XM_006719953.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 449,
          "aa_ref": "K",
          "aa_start": 446,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1561,
          "cdna_start": 1429,
          "cds_end": null,
          "cds_length": 1350,
          "cds_start": 1338,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "XM_047430606.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.1338dupA",
          "hgvs_p": "p.Ser447fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047286562.1",
          "strand": false,
          "transcript": "XM_047430606.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "K?",
          "aa_end": null,
          "aa_length": 302,
          "aa_ref": "K",
          "aa_start": 299,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1330,
          "cdna_start": 1198,
          "cds_end": null,
          "cds_length": 909,
          "cds_start": 897,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047430609.1",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "c.897dupA",
          "hgvs_p": "p.Ser300fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047286565.1",
          "strand": false,
          "transcript": "XM_047430609.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2747,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000375781.9",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "n.2615dupA",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000375781.9",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1223,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000481787.6",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "n.1117dupA",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000481787.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2313,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000535516.5",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "n.2183dupA",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000535516.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3225,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000537802.5",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "n.3095dupA",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000537802.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1485,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000540006.5",
          "gene_hgnc_id": 25695,
          "gene_symbol": "CARS2",
          "hgvs_c": "n.1348dupA",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
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  ]
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.