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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-110642364-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=110642364&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 110642364,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_024537.4",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1574C>G",
          "hgvs_p": "p.Ala525Gly",
          "transcript": "NM_024537.4",
          "protein_id": "NP_078813.1",
          "transcript_support_level": null,
          "aa_start": 525,
          "aa_end": null,
          "aa_length": 564,
          "cds_start": 1574,
          "cds_end": null,
          "cds_length": 1695,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000257347.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_024537.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1574C>G",
          "hgvs_p": "p.Ala525Gly",
          "transcript": "ENST00000257347.9",
          "protein_id": "ENSP00000257347.4",
          "transcript_support_level": 1,
          "aa_start": 525,
          "aa_end": null,
          "aa_length": 564,
          "cds_start": 1574,
          "cds_end": null,
          "cds_length": 1695,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_024537.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000257347.9"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1718C>G",
          "hgvs_p": "p.Ala573Gly",
          "transcript": "ENST00000939453.1",
          "protein_id": "ENSP00000609512.1",
          "transcript_support_level": null,
          "aa_start": 573,
          "aa_end": null,
          "aa_length": 612,
          "cds_start": 1718,
          "cds_end": null,
          "cds_length": 1839,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939453.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1568C>G",
          "hgvs_p": "p.Ala523Gly",
          "transcript": "ENST00000890914.1",
          "protein_id": "ENSP00000560973.1",
          "transcript_support_level": null,
          "aa_start": 523,
          "aa_end": null,
          "aa_length": 562,
          "cds_start": 1568,
          "cds_end": null,
          "cds_length": 1689,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890914.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1568C>G",
          "hgvs_p": "p.Ala523Gly",
          "transcript": "ENST00000939450.1",
          "protein_id": "ENSP00000609509.1",
          "transcript_support_level": null,
          "aa_start": 523,
          "aa_end": null,
          "aa_length": 562,
          "cds_start": 1568,
          "cds_end": null,
          "cds_length": 1689,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939450.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1490C>G",
          "hgvs_p": "p.Ala497Gly",
          "transcript": "ENST00000939451.1",
          "protein_id": "ENSP00000609510.1",
          "transcript_support_level": null,
          "aa_start": 497,
          "aa_end": null,
          "aa_length": 536,
          "cds_start": 1490,
          "cds_end": null,
          "cds_length": 1611,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939451.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1475C>G",
          "hgvs_p": "p.Ala492Gly",
          "transcript": "ENST00000890913.1",
          "protein_id": "ENSP00000560972.1",
          "transcript_support_level": null,
          "aa_start": 492,
          "aa_end": null,
          "aa_length": 531,
          "cds_start": 1475,
          "cds_end": null,
          "cds_length": 1596,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890913.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1439C>G",
          "hgvs_p": "p.Ala480Gly",
          "transcript": "ENST00000939452.1",
          "protein_id": "ENSP00000609511.1",
          "transcript_support_level": null,
          "aa_start": 480,
          "aa_end": null,
          "aa_length": 519,
          "cds_start": 1439,
          "cds_end": null,
          "cds_length": 1560,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000939452.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1043C>G",
          "hgvs_p": "p.Ala348Gly",
          "transcript": "ENST00000960810.1",
          "protein_id": "ENSP00000630869.1",
          "transcript_support_level": null,
          "aa_start": 348,
          "aa_end": null,
          "aa_length": 387,
          "cds_start": 1043,
          "cds_end": null,
          "cds_length": 1164,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960810.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.980C>G",
          "hgvs_p": "p.Ala327Gly",
          "transcript": "ENST00000890915.1",
          "protein_id": "ENSP00000560974.1",
          "transcript_support_level": null,
          "aa_start": 327,
          "aa_end": null,
          "aa_length": 366,
          "cds_start": 980,
          "cds_end": null,
          "cds_length": 1101,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890915.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.788C>G",
          "hgvs_p": "p.Ala263Gly",
          "transcript": "NM_001352252.2",
          "protein_id": "NP_001339181.1",
          "transcript_support_level": null,
          "aa_start": 263,
          "aa_end": null,
          "aa_length": 302,
          "cds_start": 788,
          "cds_end": null,
          "cds_length": 909,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352252.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1235C>G",
          "hgvs_p": "p.Ala412Gly",
          "transcript": "XM_006719953.4",
          "protein_id": "XP_006720016.1",
          "transcript_support_level": null,
          "aa_start": 412,
          "aa_end": null,
          "aa_length": 451,
          "cds_start": 1235,
          "cds_end": null,
          "cds_length": 1356,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_006719953.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.1229C>G",
          "hgvs_p": "p.Ala410Gly",
          "transcript": "XM_047430606.1",
          "protein_id": "XP_047286562.1",
          "transcript_support_level": null,
          "aa_start": 410,
          "aa_end": null,
          "aa_length": 449,
          "cds_start": 1229,
          "cds_end": null,
          "cds_length": 1350,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047430606.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "c.788C>G",
          "hgvs_p": "p.Ala263Gly",
          "transcript": "XM_047430609.1",
          "protein_id": "XP_047286565.1",
          "transcript_support_level": null,
          "aa_start": 263,
          "aa_end": null,
          "aa_length": 302,
          "cds_start": 788,
          "cds_end": null,
          "cds_length": 909,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047430609.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.2506C>G",
          "hgvs_p": null,
          "transcript": "ENST00000375781.9",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000375781.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.1008C>G",
          "hgvs_p": null,
          "transcript": "ENST00000481787.6",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000481787.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.*243C>G",
          "hgvs_p": null,
          "transcript": "ENST00000487253.6",
          "protein_id": "ENSP00000438267.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000487253.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.2074C>G",
          "hgvs_p": null,
          "transcript": "ENST00000535516.5",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000535516.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.2986C>G",
          "hgvs_p": null,
          "transcript": "ENST00000537802.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000537802.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CARS2",
          "gene_hgnc_id": 25695,
          "hgvs_c": "n.1239C>G",
          "hgvs_p": null,
          "transcript": "ENST00000540006.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000540006.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
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      "dbsnp": "rs750963303",
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      "computational_score_selected": 0.7397480010986328,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.187,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.2634,
      "alphamissense_prediction": "Benign",
      "bayesdelnoaf_score": -0.22,
      "bayesdelnoaf_prediction": "Benign",
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      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
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      "mitotip_score": null,
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      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
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          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_024537.4",
          "gene_symbol": "CARS2",
          "hgnc_id": 25695,
          "effects": [
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          "inheritance_mode": "AR",
          "hgvs_c": "c.1574C>G",
          "hgvs_p": "p.Ala525Gly"
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.