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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-113098517-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=113098517&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 113098517,
"ref": "A",
"alt": "T",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000535094.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "n.2996A>T",
"hgvs_p": null,
"transcript": "ENST00000469415.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3027,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001112732.3",
"protein_id": "NP_001106203.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6427,
"mane_select": "ENST00000535094.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "ENST00000535094.7",
"protein_id": "ENSP00000440374.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1125,
"cds_start": -4,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6427,
"mane_select": "NM_001112732.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "n.3176A>T",
"hgvs_p": null,
"transcript": "ENST00000488765.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3205,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "n.*2139A>T",
"hgvs_p": null,
"transcript": "ENST00000704386.1",
"protein_id": "ENSP00000515888.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5294,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438390.1",
"protein_id": "NP_001425319.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1214,
"cds_start": -4,
"cds_end": null,
"cds_length": 3645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6595,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 33,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438391.1",
"protein_id": "NP_001425320.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1211,
"cds_start": -4,
"cds_end": null,
"cds_length": 3636,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6620,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438759.1",
"protein_id": "NP_001425688.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1183,
"cds_start": -4,
"cds_end": null,
"cds_length": 3552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6502,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001437889.1",
"protein_id": "NP_001424818.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1181,
"cds_start": -4,
"cds_end": null,
"cds_length": 3546,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6595,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "ENST00000453297.6",
"protein_id": "ENSP00000392953.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1181,
"cds_start": -4,
"cds_end": null,
"cds_length": 3546,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5315,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438392.1",
"protein_id": "NP_001425321.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1180,
"cds_start": -4,
"cds_end": null,
"cds_length": 3543,
"cdna_start": null,
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"cdna_length": 6527,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438760.1",
"protein_id": "NP_001425689.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1179,
"cds_start": -4,
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"cds_length": 3540,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438761.1",
"protein_id": "NP_001425690.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1163,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 6678,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
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"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438762.1",
"protein_id": "NP_001425691.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
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"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438393.1",
"protein_id": "NP_001425322.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1155,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438763.1",
"protein_id": "NP_001425692.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
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"exon_count": 31,
"intron_rank": null,
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"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001320815.2",
"protein_id": "NP_001307744.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "ENST00000420013.6",
"protein_id": "ENSP00000404422.2",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001438764.1",
"protein_id": "NP_001425693.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 30,
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"exon_count": 30,
"intron_rank": null,
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"gene_symbol": "MCF2L",
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"hgvs_c": "c.*1658A>T",
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"transcript": "NM_001320816.2",
"protein_id": "NP_001307745.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
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"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_024979.5",
"protein_id": "NP_079255.4",
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "ENST00000375604.6",
"protein_id": "ENSP00000364754.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1123,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 6445,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MCF2L",
"gene_hgnc_id": 14576,
"hgvs_c": "c.*1658A>T",
"hgvs_p": null,
"transcript": "NM_001366645.2",
"protein_id": "NP_001353574.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1112,
"cds_start": -4,
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}