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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-113846042-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=113846042&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 113846042,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_000820.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "NM_000820.4",
"protein_id": "NP_000811.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 678,
"cds_start": null,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000327773.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000820.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000327773.7",
"protein_id": "ENSP00000331831.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 678,
"cds_start": null,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000820.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000327773.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.682+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881729.1",
"protein_id": "ENSP00000551788.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 791,
"cds_start": null,
"cds_end": null,
"cds_length": 2376,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881729.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.535+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881736.1",
"protein_id": "ENSP00000551795.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 742,
"cds_start": null,
"cds_end": null,
"cds_length": 2229,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881736.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000952114.1",
"protein_id": "ENSP00000622173.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 740,
"cds_start": null,
"cds_end": null,
"cds_length": 2223,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952114.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881740.1",
"protein_id": "ENSP00000551799.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 734,
"cds_start": null,
"cds_end": null,
"cds_length": 2205,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881740.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881726.1",
"protein_id": "ENSP00000551785.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 722,
"cds_start": null,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881726.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881723.1",
"protein_id": "ENSP00000551782.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 721,
"cds_start": null,
"cds_end": null,
"cds_length": 2166,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881723.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881737.1",
"protein_id": "ENSP00000551796.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 720,
"cds_start": null,
"cds_end": null,
"cds_length": 2163,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881737.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000952108.1",
"protein_id": "ENSP00000622167.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 720,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952108.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000952101.1",
"protein_id": "ENSP00000622160.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"feature": "ENST00000952101.1"
},
{
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"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 4,
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"gene_symbol": "GAS6",
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"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000952109.1",
"protein_id": "ENSP00000622168.1",
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"cds_start": null,
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"cdna_start": null,
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"biotype": "protein_coding",
"feature": "ENST00000952109.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
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"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881720.1",
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"cds_start": null,
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"cdna_start": null,
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"biotype": "protein_coding",
"feature": "ENST00000881720.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "GAS6",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 4,
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"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000952113.1",
"protein_id": "ENSP00000622172.1",
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"cdna_start": null,
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"mane_select": null,
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"feature": "ENST00000952113.1"
},
{
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],
"exon_rank": null,
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"gene_symbol": "GAS6",
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"hgvs_c": "c.343+485A>G",
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"transcript": "ENST00000881731.1",
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"feature": "ENST00000881731.1"
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881739.1",
"protein_id": "ENSP00000551798.1",
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"biotype": "protein_coding",
"feature": "ENST00000881739.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881721.1",
"protein_id": "ENSP00000551780.1",
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},
{
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"strand": false,
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],
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"intron_rank": 4,
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"gene_symbol": "GAS6",
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"hgvs_c": "c.343+485A>G",
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"transcript": "ENST00000881728.1",
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},
{
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"strand": false,
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"intron_variant"
],
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"gene_symbol": "GAS6",
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"hgvs_c": "c.343+485A>G",
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"transcript": "ENST00000952110.1",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"gene_symbol": "GAS6",
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"transcript": "ENST00000952106.1",
"protein_id": "ENSP00000622165.1",
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"biotype": "protein_coding",
"feature": "ENST00000952106.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAS6",
"gene_hgnc_id": 4168,
"hgvs_c": "c.343+485A>G",
"hgvs_p": null,
"transcript": "ENST00000881725.1",
"protein_id": "ENSP00000551784.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 637,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000881725.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
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