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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-19993345-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=19993345&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 19993345,
"ref": "A",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "NM_003453.6",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_197968.4",
"protein_id": "NP_932072.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000610343.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_197968.4"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000610343.5",
"protein_id": "ENSP00000479904.1",
"transcript_support_level": 1,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_197968.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000610343.5"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000382871.3",
"protein_id": "ENSP00000372324.2",
"transcript_support_level": 1,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000382871.3"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000382874.6",
"protein_id": "ENSP00000372327.2",
"transcript_support_level": 1,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000382874.6"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000620447.1",
"protein_id": "ENSP00000483904.1",
"transcript_support_level": 1,
"aa_start": 91,
"aa_end": null,
"aa_length": 275,
"cds_start": 273,
"cds_end": null,
"cds_length": 829,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000620447.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000938944.1",
"protein_id": "ENSP00000609003.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1384,
"cds_start": 273,
"cds_end": null,
"cds_length": 4155,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938944.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001190964.4",
"protein_id": "NP_001177893.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001190964.4"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001190965.4",
"protein_id": "NP_001177894.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001190965.4"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001353157.2",
"protein_id": "NP_001340086.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353157.2"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001353159.2",
"protein_id": "NP_001340088.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353159.2"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001353162.3",
"protein_id": "NP_001340091.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353162.3"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_001353164.2",
"protein_id": "NP_001340093.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353164.2"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "NM_003453.6",
"protein_id": "NP_003444.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003453.6"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000875035.1",
"protein_id": "ENSP00000545094.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875035.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000875036.1",
"protein_id": "ENSP00000545095.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875036.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000875038.1",
"protein_id": "ENSP00000545097.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875038.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000875040.1",
"protein_id": "ENSP00000545099.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875040.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000875041.1",
"protein_id": "ENSP00000545100.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875041.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000938943.1",
"protein_id": "ENSP00000609002.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938943.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000938945.1",
"protein_id": "ENSP00000609004.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938945.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000938947.1",
"protein_id": "ENSP00000609006.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000938947.1"
},
{
"aa_ref": "E",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM2",
"gene_hgnc_id": 12989,
"hgvs_c": "c.273A>G",
"hgvs_p": "p.Glu91Glu",
"transcript": "ENST00000938948.1",
"protein_id": "ENSP00000609007.1",
"transcript_support_level": null,
"aa_start": 91,
"aa_end": null,
"aa_length": 1377,
"cds_start": 273,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
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}