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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-36329371-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=36329371&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 36329371,
      "ref": "A",
      "alt": "C",
      "effect": "synonymous_variant",
      "transcript": "NM_015087.5",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "NM_015087.5",
          "protein_id": "NP_055902.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000438666.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015087.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000438666.7",
          "protein_id": "ENSP00000406061.2",
          "transcript_support_level": 1,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_015087.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000438666.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000451493.5",
          "protein_id": "ENSP00000414147.1",
          "transcript_support_level": 1,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000451493.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000494062.2",
          "protein_id": "ENSP00000473599.1",
          "transcript_support_level": 1,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000494062.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1206T>G",
          "hgvs_p": "p.Arg402Arg",
          "transcript": "ENST00000888927.1",
          "protein_id": "ENSP00000558986.1",
          "transcript_support_level": null,
          "aa_start": 402,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 1206,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888927.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "NM_001142294.2",
          "protein_id": "NP_001135766.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001142294.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "NM_001142295.2",
          "protein_id": "NP_001135767.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001142295.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "NM_001142296.2",
          "protein_id": "NP_001135768.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001142296.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000355182.8",
          "protein_id": "ENSP00000347314.4",
          "transcript_support_level": 5,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000355182.8"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000650221.1",
          "protein_id": "ENSP00000497209.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000650221.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888906.1",
          "protein_id": "ENSP00000558965.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888906.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888908.1",
          "protein_id": "ENSP00000558967.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888908.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888909.1",
          "protein_id": "ENSP00000558968.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888909.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888910.1",
          "protein_id": "ENSP00000558969.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888910.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888912.1",
          "protein_id": "ENSP00000558971.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888912.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888913.1",
          "protein_id": "ENSP00000558972.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
          "cds_length": 2001,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000888913.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888914.1",
          "protein_id": "ENSP00000558973.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
          "cds_end": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000888914.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888916.1",
          "protein_id": "ENSP00000558975.1",
          "transcript_support_level": null,
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          "aa_length": 666,
          "cds_start": 1155,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000888916.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888917.1",
          "protein_id": "ENSP00000558976.1",
          "transcript_support_level": null,
          "aa_start": 385,
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          "aa_length": 666,
          "cds_start": 1155,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888917.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SPART",
          "gene_hgnc_id": 18514,
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg",
          "transcript": "ENST00000888918.1",
          "protein_id": "ENSP00000558977.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 666,
          "cds_start": 1155,
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          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888918.1"
        },
        {
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      "gene_symbol": "SPART",
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      "dbsnp": "rs140222511",
      "frequency_reference_population": 0.00030048785,
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      "allele_count_reference_population": 485,
      "gnomad_exomes_af": 0.000169652,
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      "gnomad_exomes_ac": 248,
      "gnomad_genomes_ac": 237,
      "gnomad_exomes_homalt": 2,
      "gnomad_genomes_homalt": 1,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.6100000143051147,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0.1599999964237213,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.61,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.28,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.16,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -14,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -14,
          "benign_score": 14,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_015087.5",
          "gene_symbol": "SPART",
          "hgnc_id": 18514,
          "effects": [
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          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1155T>G",
          "hgvs_p": "p.Arg385Arg"
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      ],
      "clinvar_disease": "Troyer syndrome,not provided",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:1 B:2",
      "phenotype_combined": "Troyer syndrome|not provided",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}