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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-48707418-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=48707418&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 48707418,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_020377.5",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308476.3",
          "protein_id": "NP_001295405.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 955,
          "cdna_end": null,
          "cdna_length": 4763,
          "mane_select": "ENST00000682523.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308476.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000682523.1",
          "protein_id": "ENSP00000508181.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 955,
          "cdna_end": null,
          "cdna_length": 4763,
          "mane_select": "NM_001308476.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682523.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000614739.4",
          "protein_id": "ENSP00000477930.1",
          "transcript_support_level": 1,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 1150,
          "cdna_end": null,
          "cdna_length": 1908,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000614739.4"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308465.3",
          "protein_id": "NP_001295394.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 1084,
          "cdna_end": null,
          "cdna_length": 4892,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308465.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308467.3",
          "protein_id": "NP_001295396.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 1061,
          "cdna_end": null,
          "cdna_length": 4869,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308467.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308468.3",
          "protein_id": "NP_001295397.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 882,
          "cdna_end": null,
          "cdna_length": 4690,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308468.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308469.3",
          "protein_id": "NP_001295398.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 859,
          "cdna_end": null,
          "cdna_length": 4667,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308469.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308470.3",
          "protein_id": "NP_001295399.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 792,
          "cdna_end": null,
          "cdna_length": 4600,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308470.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001308471.3",
          "protein_id": "NP_001295400.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": 691,
          "cdna_end": null,
          "cdna_length": 4499,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308471.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001387012.1",
          "protein_id": "NP_001373941.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
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          "cdna_start": 831,
          "cdna_end": null,
          "cdna_length": 4639,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001387012.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001387013.1",
          "protein_id": "NP_001373942.1",
          "transcript_support_level": null,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
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          "cds_length": 1041,
          "cdna_start": 865,
          "cdna_end": null,
          "cdna_length": 4673,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001387013.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
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          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "CYSLTR2",
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          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_001387014.1",
          "protein_id": "NP_001373943.1",
          "transcript_support_level": null,
          "aa_start": 201,
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          "aa_length": 346,
          "cds_start": 601,
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          "cds_length": 1041,
          "cdna_start": 988,
          "cdna_end": null,
          "cdna_length": 4796,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001387014.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
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          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "NM_020377.5",
          "protein_id": "NP_065110.1",
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          "aa_start": 201,
          "aa_end": null,
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          "cds_start": 601,
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          "cdna_start": 932,
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          "cdna_length": 4740,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_020377.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 1,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000282018.4",
          "protein_id": "ENSP00000282018.3",
          "transcript_support_level": 6,
          "aa_start": 201,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 601,
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          "cdna_start": 864,
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        },
        {
          "aa_ref": "M",
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          ],
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          "intron_rank": null,
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          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000859943.1",
          "protein_id": "ENSP00000530002.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000859943.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000859944.1",
          "protein_id": "ENSP00000530003.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "M",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 4,
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          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000859945.1",
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        {
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          "gene_symbol": "CYSLTR2",
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        },
        {
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          ],
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          "hgvs_c": "c.601A>G",
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          "transcript": "ENST00000859947.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYSLTR2",
          "gene_hgnc_id": 18274,
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val",
          "transcript": "ENST00000859948.1",
          "protein_id": "ENSP00000530007.1",
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          "cdna_start": 1152,
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          "cds_length": 1041,
          "cdna_start": 865,
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          "cdna_length": 4668,
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        {
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        {
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          "biotype": "protein_coding",
          "feature": "ENST00000945014.1"
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      ],
      "gene_symbol": "CYSLTR2",
      "gene_hgnc_id": 18274,
      "dbsnp": "rs41347648",
      "frequency_reference_population": 0.022489117,
      "hom_count_reference_population": 481,
      "allele_count_reference_population": 36300,
      "gnomad_exomes_af": 0.023095,
      "gnomad_genomes_af": 0.016673,
      "gnomad_exomes_ac": 33761,
      "gnomad_genomes_ac": 2539,
      "gnomad_exomes_homalt": 450,
      "gnomad_genomes_homalt": 31,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.004935324192047119,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.058,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1229,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.65,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.481,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -9,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BS1_Supporting,BS2",
      "acmg_by_gene": [
        {
          "score": -9,
          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BS1_Supporting",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_020377.5",
          "gene_symbol": "CYSLTR2",
          "hgnc_id": 18274,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.601A>G",
          "hgvs_p": "p.Met201Val"
        }
      ],
      "clinvar_disease": "not provided,not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:2",
      "phenotype_combined": "not specified|not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.