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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-50945470-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=50945470&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 50945470,
"ref": "T",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000336617.8",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "NM_024570.4",
"protein_id": "NP_078846.2",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 312,
"cds_start": 554,
"cds_end": null,
"cds_length": 939,
"cdna_start": 840,
"cdna_end": null,
"cdna_length": 1513,
"mane_select": "ENST00000336617.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000336617.8",
"protein_id": "ENSP00000337623.2",
"transcript_support_level": 1,
"aa_start": 185,
"aa_end": null,
"aa_length": 312,
"cds_start": 554,
"cds_end": null,
"cds_length": 939,
"cdna_start": 840,
"cdna_end": null,
"cdna_length": 1513,
"mane_select": "NM_024570.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000646960.1",
"protein_id": "ENSP00000496481.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 355,
"cds_start": 554,
"cds_end": null,
"cds_length": 1068,
"cdna_start": 850,
"cdna_end": null,
"cdna_length": 1711,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000643159.1",
"protein_id": "ENSP00000495587.1",
"transcript_support_level": null,
"aa_start": 155,
"aa_end": null,
"aa_length": 324,
"cds_start": 464,
"cds_end": null,
"cds_length": 975,
"cdna_start": 1201,
"cdna_end": null,
"cdna_length": 2155,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000642721.1",
"protein_id": "ENSP00000495650.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 319,
"cds_start": 554,
"cds_end": null,
"cds_length": 960,
"cdna_start": 627,
"cdna_end": null,
"cdna_length": 1033,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.575T>G",
"hgvs_p": "p.Val192Gly",
"transcript": "ENST00000713971.1",
"protein_id": "ENSP00000519263.1",
"transcript_support_level": null,
"aa_start": 192,
"aa_end": null,
"aa_length": 319,
"cds_start": 575,
"cds_end": null,
"cds_length": 960,
"cdna_start": 607,
"cdna_end": null,
"cdna_length": 1278,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.545T>G",
"hgvs_p": "p.Val182Gly",
"transcript": "ENST00000645188.1",
"protein_id": "ENSP00000496224.1",
"transcript_support_level": null,
"aa_start": 182,
"aa_end": null,
"aa_length": 309,
"cds_start": 545,
"cds_end": null,
"cds_length": 930,
"cdna_start": 854,
"cdna_end": null,
"cdna_length": 1525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.518T>G",
"hgvs_p": "p.Val173Gly",
"transcript": "ENST00000643774.1",
"protein_id": "ENSP00000495482.1",
"transcript_support_level": null,
"aa_start": 173,
"aa_end": null,
"aa_length": 300,
"cds_start": 518,
"cds_end": null,
"cds_length": 903,
"cdna_start": 1189,
"cdna_end": null,
"cdna_length": 1837,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000643682.1",
"protein_id": "ENSP00000493655.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 293,
"cds_start": 554,
"cds_end": null,
"cds_length": 882,
"cdna_start": 639,
"cdna_end": null,
"cdna_length": 1366,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000616907.2",
"protein_id": "ENSP00000482701.2",
"transcript_support_level": 3,
"aa_start": 185,
"aa_end": null,
"aa_length": 289,
"cds_start": 554,
"cds_end": null,
"cds_length": 870,
"cdna_start": 624,
"cdna_end": null,
"cdna_length": 3410,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000645955.1",
"protein_id": "ENSP00000495755.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 289,
"cds_start": 554,
"cds_end": null,
"cds_length": 870,
"cdna_start": 713,
"cdna_end": null,
"cdna_length": 1829,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000611510.5",
"protein_id": "ENSP00000481236.3",
"transcript_support_level": 5,
"aa_start": 155,
"aa_end": null,
"aa_length": 282,
"cds_start": 464,
"cds_end": null,
"cds_length": 849,
"cdna_start": 774,
"cdna_end": null,
"cdna_length": 1257,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000637648.3",
"protein_id": "ENSP00000490077.3",
"transcript_support_level": 3,
"aa_start": 155,
"aa_end": null,
"aa_length": 282,
"cds_start": 464,
"cds_end": null,
"cds_length": 849,
"cdna_start": 977,
"cdna_end": null,
"cdna_length": 1632,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000646709.1",
"protein_id": "ENSP00000495278.1",
"transcript_support_level": null,
"aa_start": 155,
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"cds_start": 464,
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"cdna_start": 3348,
"cdna_end": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000713976.1",
"protein_id": "ENSP00000519267.1",
"transcript_support_level": null,
"aa_start": 155,
"aa_end": null,
"aa_length": 282,
"cds_start": 464,
"cds_end": null,
"cds_length": 849,
"cdna_start": 674,
"cdna_end": null,
"cdna_length": 1088,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.437T>G",
"hgvs_p": "p.Val146Gly",
"transcript": "ENST00000642995.1",
"protein_id": "ENSP00000493499.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 273,
"cds_start": 437,
"cds_end": null,
"cds_length": 822,
"cdna_start": 444,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.518T>G",
"hgvs_p": "p.Val173Gly",
"transcript": "ENST00000645370.2",
"protein_id": "ENSP00000494019.2",
"transcript_support_level": null,
"aa_start": 173,
"aa_end": null,
"aa_length": 272,
"cds_start": 518,
"cds_end": null,
"cds_length": 819,
"cdna_start": 1178,
"cdna_end": null,
"cdna_length": 1928,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.518T>G",
"hgvs_p": "p.Val173Gly",
"transcript": "ENST00000643215.2",
"protein_id": "ENSP00000495031.2",
"transcript_support_level": null,
"aa_start": 173,
"aa_end": null,
"aa_length": 269,
"cds_start": 518,
"cds_end": null,
"cds_length": 810,
"cdna_start": 1178,
"cdna_end": null,
"cdna_length": 1939,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "NM_001411023.1",
"protein_id": "NP_001397952.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 266,
"cds_start": 554,
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"cdna_start": 840,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "ENST00000645990.1",
"protein_id": "ENSP00000496571.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 266,
"cds_start": 554,
"cds_end": null,
"cds_length": 801,
"cdna_start": 578,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.464T>G",
"hgvs_p": "p.Val155Gly",
"transcript": "ENST00000645618.1",
"protein_id": "ENSP00000495429.1",
"transcript_support_level": null,
"aa_start": 155,
"aa_end": null,
"aa_length": 263,
"cds_start": 464,
"cds_end": null,
"cds_length": 792,
"cdna_start": 923,
"cdna_end": null,
"cdna_length": 1700,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
"transcript": "NM_001142279.2",
"protein_id": "NP_001135751.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 257,
"cds_start": 554,
"cds_end": null,
"cds_length": 774,
"cdna_start": 953,
"cdna_end": null,
"cdna_length": 1669,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RNASEH2B",
"gene_hgnc_id": 25671,
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly",
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],
"gene_symbol": "RNASEH2B",
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"dbsnp": "rs74555752",
"frequency_reference_population": 0.000003421152,
"hom_count_reference_population": 0,
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"gnomad_exomes_homalt": 0,
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"computational_score_selected": 0.9790525436401367,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.85,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.4766,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.51,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 5.103,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"acmg_score": 14,
"acmg_classification": "Pathogenic",
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"acmg_by_gene": [
{
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"PP3_Strong",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "ENST00000336617.8",
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"effects": [
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],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.554T>G",
"hgvs_p": "p.Val185Gly"
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],
"clinvar_disease": "Aicardi-Goutieres syndrome 2,not provided",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:3 LP:2",
"phenotype_combined": "Aicardi-Goutieres syndrome 2|not provided",
"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}